Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O01
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 309 FYILLITCLFLHF 347
           F+IL+IT +FL+F
Sbjct: 8   FFILVITLIFLYF 20


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 240 SLCLTLCNSCLRMSKIYL*MIRP 308
           SL  ++  +CL   K+Y+ +IRP
Sbjct: 887 SLSASVTIACLFSPKLYIILIRP 909


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 12   RKYYNFTLKIIKIT 53
            RKY N+T++++  T
Sbjct: 1181 RKYTNYTIQVLAFT 1194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 12   RKYYNFTLKIIKIT 53
            RKY N+T++++  T
Sbjct: 1177 RKYTNYTIQVLAFT 1190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,125
Number of Sequences: 438
Number of extensions: 1656
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)