Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N24
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    232   1e-61
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   225   2e-59
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631...    27   9.3  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.3  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  232 bits (568), Expect = 1e-61
 Identities = 108/186 (58%), Positives = 146/186 (78%), Gaps = 1/186 (0%)
 Frame = +2

Query: 41  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 217
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 218 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 397
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 398 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIXKFLDGLYV 577
            +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDI KFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180

Query: 578 SEKTTV 595
           S+K T+
Sbjct: 181 SDKGTI 186


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  225 bits (550), Expect = 2e-59
 Identities = 105/179 (58%), Positives = 139/179 (77%), Gaps = 3/179 (1%)
 Frame = +2

Query: 68  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 238
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 239 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 418
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 419 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIXKFLDGLYVSEKTTV 595
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDI KFLDG+YVS+K T+
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 179


>04_04_0168 + 23259459-23260001,23260883-23262780,23263000-23263150,
            23263851-23264669
          Length = 1136

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 115  HQTRFHMDR---KPVWDFDFLICYNLLHVWALFDXKSRKKK 2
            ++  +H DR   K  W F ++ C NLL + A    + R++K
Sbjct: 1082 YRVTYHPDRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQK 1122


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 137 VLKRNF-KHLAVDIRMVNPRLLKVE 208
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,795
Number of Sequences: 37544
Number of extensions: 333805
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)