Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N23
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    91   1e-19
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 47/111 (42%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +3

Query: 381 RTMFIQTQDTPNPNSLKFLPGTKVLEPG-QTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 557
           R+++I++++TPN N+LKFLPG  +L P   + +F        SPLA+ LF IDGV ++FF
Sbjct: 41  RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFF 100

Query: 558 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTD--AKPSGDTPI 704
           G +FITV+K     +W  +KPE+F  IM+  ++G PV+++   K + DT I
Sbjct: 101 GKDFITVSK-GAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQI 150


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 278  IRINFTKADKKVPWTIRYFKV*HSTKESSSFCMLPY 385
            + +  T+  K VPW +R  K+    K     C++ Y
Sbjct: 920  LSLRLTERKKFVPWILRGLKLASEGKPLEDLCLVQY 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,575
Number of Sequences: 5004
Number of extensions: 54443
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)