Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N23
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920          117   1e-26
07_01_0130 - 963856-965454                                             28   8.3  
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    28   8.3  

>05_01_0403 + 3179513-3179570,3181576-3181737,3182721-3182920
          Length = 139

 Score =  117 bits (281), Expect = 1e-26
 Identities = 61/110 (55%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
 Frame = +3

Query: 381 RTMFIQTQDTPNPNSLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFG 560
           R MFIQTQ TPNP SL F PG  V+E G + DFPN   A  SPLAK LF IDGV  VFFG
Sbjct: 23  RGMFIQTQSTPNPQSLMFYPGKPVMEVGSS-DFPNARTAMTSPLAKALFAIDGVTRVFFG 81

Query: 561 PEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAK--PSGDTPI 704
            +F+TVTK  ++  W  LKPE+F  IMDF++SG  +  D+    S DT I
Sbjct: 82  SDFVTVTK-SEETSWDYLKPEVFAVIMDFYSSGQSLFLDSSTAASMDTAI 130


>07_01_0130 - 963856-965454
          Length = 532

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 271 VYYSHQLYKGRQESTMDYQVF*SL---TFHKRVQLFLHASVPCSYKLK 405
           VY+ H+LYK      MD  +  SL   TF++   L LHA     + L+
Sbjct: 376 VYFDHELYKNFTGPFMDLNIMASLIQATFYEGNWLSLHAHTRSYFLLR 423


>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 405 DTPNPNSLKFLPGTKVLEPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTK 584
           D P    LK + G++ +E  QT+     G    + LAK ++    + ++F    +ITV++
Sbjct: 132 DGPKKEILKMISGSEDVEV-QTIWIVGAGGLGKTTLAKKVYESSNITSMFPCRAWITVSQ 190

Query: 585 QDDDVDWKLLKPEI 626
             D +D  LLK  I
Sbjct: 191 SFDVMD--LLKDMI 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,669
Number of Sequences: 37544
Number of extensions: 313157
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)