Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N23
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...   122   2e-28
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    29   4.3  
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    29   4.3  
Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score =  122 bits (295), Expect = 2e-28
 Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
 Frame = +3

Query: 381 RTMFIQTQDTPNPNSLKFLPGTKVL-EPGQTLDFPNIGAAHCSPLAKMLFRIDGVKAVFF 557
           R+M+IQ Q+TPNP SLKFLPG ++L +  +T DF +   A  SPLA  L R+DGVK VFF
Sbjct: 14  RSMYIQVQETPNPLSLKFLPGQQLLPDASKTYDFSSAATAKQSPLAIKLLRVDGVKRVFF 73

Query: 558 GPEFITVTKQDDDVDWKLLKPEIFGTIMDFFASGLPVVTDAKPSGD 695
           G +F+TVTK D+ VDW LL+PEIF TI D   +G PV+ +A    D
Sbjct: 74  GEDFVTVTKSDETVDWALLRPEIFSTIADHIQTGKPVINEAATVSD 119


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 384 YGSMQKELDSFVECQTLKYLIVHGTFLSAFVKLMRIVHGCTVYY 253
           Y       D  + C T KY + H  ++S F+  ++++     YY
Sbjct: 125 YSVFSLAFDRLISCYTPKYYLSHQYYVSIFLLFIQLIFTLGTYY 168


>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = +3

Query: 321 LSGILKSDIPQKSPALFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 482
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 483 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 632
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
 Frame = +3

Query: 321 LSGILKSDIPQKSPALFACFRTMFIQTQD------TPNPNSLKFLPGTKVLEPGQTLDFP 482
           L  I   D+P++    F C +T+F  + D      TPN  S K   G +  E    LD  
Sbjct: 177 LKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQ--EVADQLDVK 234

Query: 483 NIGAAHCSPLAKMLFRIDGVKAVFFGPEFITVTKQDDDVDWKLLKPEIFG 632
             G  H +          G  A+     F  + KQ    +W  + P I G
Sbjct: 235 RQGVRHQA----------GSDALLTAATFFKIKKQFFGDNWNQIAPLICG 274


>Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical
           protein K05D4.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 346 MSDFKIPDSPWYFLVCLCKVDANSTRLH 263
           M DF   + P+YF +CL  V A S  LH
Sbjct: 1   MVDFSFLNEPYYFSMCLYVVGALSFPLH 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,272
Number of Sequences: 27780
Number of extensions: 303091
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)