Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_N21
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 149 2e-36
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 146 1e-35
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 138 5e-33
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.024
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 28 8.6
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 149 bits (362), Expect = 2e-36
Identities = 93/224 (41%), Positives = 119/224 (53%), Gaps = 8/224 (3%)
Frame = +2
Query: 68 MAVGXVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 247
+ + V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 248 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXX 412
S +AE + ++ VDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 413 XXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 592
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 593 PVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEXFVQSVDI 715
PVGYGI KLQIM I DD VSVD L E + F+QS DI
Sbjct: 196 PVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDI 239
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 146 bits (355), Expect = 1e-35
Identities = 91/216 (42%), Positives = 115/216 (53%), Gaps = 7/216 (3%)
Frame = +2
Query: 89 TAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAER 268
TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ ++
Sbjct: 10 TADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRF 69
Query: 269 KTWSQGTS----PLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAY 436
+ G + +DLFG +
Sbjct: 70 PGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERA 122
Query: 437 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 616
A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYGI K
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKK 182
Query: 617 LQIMCVIEDDKVSVD-LLTEKIQE--FEXFVQSVDI 715
LQIM I DD VSVD L+ E + E FVQS DI
Sbjct: 183 LQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDI 218
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 138 bits (333), Expect = 5e-33
Identities = 89/222 (40%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Frame = +2
Query: 83 VKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----A 247
V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 8 VSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRL 67
Query: 248 SYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXX 418
S +A+ K S VDLFG
Sbjct: 68 SGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE--- 124
Query: 419 XXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPV 598
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPV
Sbjct: 125 ---RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPV 181
Query: 599 GYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEXFVQSVDI 715
GYGI KLQIM I DD VSVD L E + ++QS DI
Sbjct: 182 GYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDI 223
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +2
Query: 101 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 244
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = -3
Query: 223 YVGKVSGRRLANLLKYLNISLR-----RSVSRHVAFLS*ILVQVIETLGGFNXSYSH 68
Y G+VS L+ LK+L+ SLR R V+R A L++++ ++G + ++H
Sbjct: 61 YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNH 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,684
Number of Sequences: 37544
Number of extensions: 359323
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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