Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N19
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.1  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 167 RPSVYGLAPRTAAAVRYNVTSARRLPS 247
           R S Y LA  T ++  YN   A  LPS
Sbjct: 170 RSSYYDLATPTRSSFSYNTVGAASLPS 196


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/70 (28%), Positives = 25/70 (35%)
 Frame = -1

Query: 565 SHRXNATVSIQSLSFRTNERSYEQRFCSYSPPRRIWVTAFRTLKPRFPCEFSGEAVEGTR 386
           SH   +  S+   S    ER     F +  PP+  W T     K R        A +  R
Sbjct: 436 SHSYGSPKSLHHKSSSAGERPVSPTFVADIPPKTPWGTTLINRKLREEVLREVFAPKHAR 495

Query: 385 WRPSRRDHSR 356
            R   R HSR
Sbjct: 496 RRLGTRFHSR 505


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 245 RGVVLRWSHYSAPPPLSSGPARKQT 171
           RGV+L +S    P P+   P +K+T
Sbjct: 185 RGVLLNFSELFKPKPVKLAPPKKKT 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,542
Number of Sequences: 5004
Number of extensions: 31691
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)