Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N19
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1299 + 25598869-25600006,25600718-25600773                       29   3.6  
12_01_0485 - 3848721-3849227,3852019-3852369                           28   6.2  
01_06_1682 - 39130696-39131705,39132355-39132583                       28   6.2  

>07_03_1299 + 25598869-25600006,25600718-25600773
          Length = 397

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 475 PPRRIWVTAFRTLKPRFPCEFSGEAVEGTRWR 380
           PP+R      R L+PR+  E +G+++EG R R
Sbjct: 214 PPQRQHRRIIRRLRPRYLPELTGDSLEGYRRR 245


>12_01_0485 - 3848721-3849227,3852019-3852369
          Length = 285

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +2

Query: 398 DRLAAELAWKSWLQSPESGNPNAPRRRITTKSLFITPLVCPKGQRL 535
           DR     AWKSWL+   +    AP   +     ++ P   P   RL
Sbjct: 127 DRTVLTNAWKSWLEEHITATGKAPPGNVAGNHTWVGPPQRPPDLRL 172


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 221 HYSAPPPLSSGPARKQTAVLKINQSPP 141
           HYS PPPL        T  +   QSPP
Sbjct: 380 HYSPPPPLQHAGISSTTPSVNSYQSPP 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,490
Number of Sequences: 37544
Number of extensions: 257334
Number of successful extensions: 840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)