Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N17
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   272   3e-74
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   3.7  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   4.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   8.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   8.5  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  272 bits (667), Expect = 3e-74
 Identities = 131/182 (71%), Positives = 149/182 (81%)
 Frame = +2

Query: 59  AVHNLSXQXKFVGSGVFKAELNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 238
           A   +S + KFV  GVF AELN F TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 239 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 418
           EKGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 419 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQG 598
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF  G MIHSG P  D++++ATRHVLL QG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 599 VL 604
           VL
Sbjct: 183 VL 184


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 209 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 385
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 386 IG 391
           +G
Sbjct: 784 LG 785


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 45   PLQSWPCTIFQXSXNLLDLGFSRRNSMXSSLGSWPRTATPAWKCGSLPS 191
            P+ S+    F  +    DLG  R  S   S   +  T    W  GS+PS
Sbjct: 1892 PVGSFSVAPFLDAYGETDLGLRRGRSQYLSQKRYDETVRTMWLNGSIPS 1940


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  IFQXSXNLLDLGFSRRNSMXSSLGSWPRTATPAWKCGSLPSARRS 203
           I + S   LD  +S  +S      ++P+T  P W+ G+ P ++ S
Sbjct: 121 ISKDSVKHLDKTYSSIDSKKDFKYNFPKTQAPEWRRGAKPLSKTS 165


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 327 FSAYNSTDCSGMLNRFCTTEVSSR 256
           + +Y S+DC G+L+R   T+   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 425  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRH 580
            + F ME   +  + ++  +L+     S K    ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 313 FYRLLWNVESLLYYGSQL 260
           FYRL W  + +LY  SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 387 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 229
           + L L+    A+     ++      S+     +N F  T  SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,341
Number of Sequences: 5004
Number of extensions: 47692
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)