Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_N17
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 292 1e-79
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 30 1.2
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.1
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 29 2.8
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 2.8
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 3.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 5.0
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 6.5
08_01_0346 - 3063440-3064189 28 6.5
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 292 bits (717), Expect = 1e-79
Identities = 146/184 (79%), Positives = 158/184 (85%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 MAVHN-LSXQXKFVGSGVFKAELNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 232
MA H +S + KFV GVF AELN LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+V
Sbjct: 1 MATHTQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNV 60
Query: 233 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 412
LGEKGRRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRA
Sbjct: 61 LGEKGRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRA 120
Query: 413 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLX 592
CYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF G MI SG P N Y+++A RHVLL
Sbjct: 121 CYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLR 180
Query: 593 QGVL 604
QGVL
Sbjct: 181 QGVL 184
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = -1
Query: 601 YSLXEKHMSGSSVDVIITRVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 422
+ L + + GS +++ T V R D ++ Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 421 TIASTTYSETSDKLVS 374
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 328 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 423
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -3
Query: 554 HYKGLQSGS*VHX-QTSLIWHVDHA-----ACQIQQLHNH 453
HY GS + +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 512 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 408
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 132 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 236
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +2
Query: 56 MAVHNLSXQXKFVGSGVFKAELNXFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV- 232
+ +H+LS K + + + + L ++ + + S +E +V +RSE+ M +TQ +
Sbjct: 838 LKLHDLSQGLKKTVAELNSMKDSALLQQQKSSEKVSYLEAQVLVVRSEMEKMVQKTQMLD 897
Query: 233 --LGEKGRRIRELTSVVQKR 286
L K + I EL + +Q++
Sbjct: 898 QELEHKNKEISELQNSLQEQ 917
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 542 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 447
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 362 AESLRYKLIGGLAVRRACYGVLR 430
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,276
Number of Sequences: 37544
Number of extensions: 350062
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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