Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N16
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    47   4e-06
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    29   0.76 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   1.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.3  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   7.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   7.1  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   9.4  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 12/186 (6%)
 Frame = +1

Query: 190 IPYAKPPVGARXXXXXXXXXXXXXXXYAYEEGPA-CPSRDTIYGSITVKRKGMS--ENCI 360
           I YAKPPVG                   Y +    CP          V+       E+C+
Sbjct: 24  IRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDEDCL 83

Query: 361 YANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLH-GPELLMLKD----VI 525
           + N++VPA      ++  E    P+L  IHGG  Q G+        P+ L         I
Sbjct: 84  FLNIWVPAG-----EKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFI 136

Query: 526 VVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFGGDPXRVTILGX 693
           +V+  +RL +FG+L+    L       N G  D    L+W  ++ + FGG+   + + G 
Sbjct: 137 LVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGI 196

Query: 694 SAGAXS 711
           SAG+ S
Sbjct: 197 SAGSYS 202


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 583 KIPGNNGLRDMVTLLKWVQRNAKVFGGDPXRVTILGXSAGA 705
           K P ++ +  +   + W+  NA  +  DP R+  LG   GA
Sbjct: 230 KFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGA 270


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 55  FSLVQRSLXRPSLKNVLCWCSXPRAL 132
           + L+  S+ +  LK VL WCS  RA+
Sbjct: 158 YQLIHDSILQQELKEVLSWCSEHRAI 183


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 553 IFGYLSLASHKIPGNNGLRDMVTLLKWV 636
           I GYLSL+  K  GN+ +     LL WV
Sbjct: 50  ISGYLSLSKSKALGNSSVAGSDILLSWV 77


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 471 SCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 340
           S + PT+VDI      + + IV  +F  VQS  R Y YIS+  V THS
Sbjct: 56  SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 414  RRQFTAHIGEYPRWWV 461
            R QF  H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 334 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 447
           RKG     I A    P     +   LCEDN++P L  +
Sbjct: 66  RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,589
Number of Sequences: 5004
Number of extensions: 60396
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)