Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_N15
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 261 6e-71
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 171 1e-43
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 141 8e-35
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 139 4e-34
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 138 7e-34
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 125 6e-30
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 125 7e-30
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 122 7e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 115 8e-27
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 114 1e-26
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 114 1e-26
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 113 2e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 113 3e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 110 2e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 103 3e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 98 1e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 97 2e-21
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 96 5e-21
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 94 2e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 91 1e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 87 3e-18
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 80 4e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 78 1e-15
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 39 8e-04
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 32 0.073
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.096
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 30 0.39
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.7
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 3.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 4.8
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 8.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.3
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 261 bits (640), Expect = 6e-71
Identities = 120/196 (61%), Positives = 156/196 (79%)
Frame = +3
Query: 138 TNQASXVEQTPTENVNEXTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALL 317
T+ +S + + N + + TFK+LGV+D LCEACE+L +K P+ IQ+EAIPV L
Sbjct: 23 TSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
Query: 318 GKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIG 497
+D+IGLA+TGSGKT AFALP++Q L NP +FA++L PTRELA+QISEQFEA+G SIG
Sbjct: 83 KRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIG 142
Query: 498 VKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL 677
V+ VIVGGMDMV QA+ LSKKPH+++ TPGRL+DHLENTKGF+L+ LKYL+MDEADR+L
Sbjct: 143 VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLL 202
Query: 678 NMDFEVEVDXILRVIP 725
+MDF +D IL++IP
Sbjct: 203 DMDFGPIIDKILKIIP 218
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 171 bits (415), Expect = 1e-43
Identities = 88/181 (48%), Positives = 124/181 (68%), Gaps = 3/181 (1%)
Frame = +3
Query: 192 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 371
+E + +F DLG+ L + + L +P+ IQ+ I L G++ IG A+TGSGKT AF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 372 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 551
ALPI++ ++P FALILTPTRELA QI EQF ALGA++ +K A+IVGGMDM+ Q++
Sbjct: 62 ALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 552 LSKKPHIIIATPGRLVDHLENTKG---FNLRPLKYLVMDEADRILNMDFEVEVDXILRVI 722
LSK+PH+++ATPGRL D + + LR +K+LVMDEADR+L+ F ++D V+
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 723 P 725
P
Sbjct: 182 P 182
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 141 bits (342), Expect = 8e-35
Identities = 70/175 (40%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Frame = +3
Query: 210 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 389
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 390 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 560
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 561 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXILRVIP 725
+P I+IATPGR +DH+ N++GF + ++ +VMDEADR+L F E++ I++ P
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP 434
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 139 bits (336), Expect = 4e-34
Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 8/179 (4%)
Frame = +3
Query: 213 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 392
+++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT AF +P++ A
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 393 LLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 548
+ + P +A++L PTRELA QI + +G +C +VGG Q+
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 549 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXILRVIP 725
+S+ HI++ATPGRL+D LE + F L Y+VMDEADR+L+M FE +V+ IL +P
Sbjct: 371 QMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 138 bits (334), Expect = 7e-34
Identities = 77/187 (41%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Frame = +3
Query: 177 NVNEXTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSG 356
N+N + D F DL + + + +A +E+ ++ ++IQK +IP L G+D++G A+TGSG
Sbjct: 79 NLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSG 138
Query: 357 KTGAFALP---ILQALLENPQRYFA-LILTPTRELAFQISEQFEALGASIGVKCAVIVGG 524
KT AF +P +L AL P+ +I++PTRELA QI + L +++GG
Sbjct: 139 KTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGG 198
Query: 525 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVD 704
+ A+A L K ++++ATPGRL+DHL+NTKGF R L+ LV+DEADRIL + FE E+
Sbjct: 199 ANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMR 258
Query: 705 XILRVIP 725
I++++P
Sbjct: 259 QIMKILP 265
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 125 bits (302), Expect = 6e-30
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Frame = +3
Query: 213 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 392
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 393 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 563
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 564 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXILRVIP 725
P I++ATPGR + HL+ L ++Y+V DEADR+ M F ++ IL +P
Sbjct: 190 PDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALP 242
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 125 bits (301), Expect = 7e-30
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
Frame = +3
Query: 267 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 440
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 441 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL-ENT 617
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPGRL + EN
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENN 261
Query: 618 KGFNLRPLKYLVMDEADRILNMDFEVEVDXILRVI 722
N + +K LV+DEADR+L E+ +L ++
Sbjct: 262 LTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEIL 296
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 122 bits (293), Expect = 7e-29
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Frame = +3
Query: 210 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 386
TF++ G + + + ++L ++ P+ IQ++A P+A+ G+D++G++ TGSGKT ++ LP +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 387 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 554
Q LL L+L PTRELA QI ++ G S ++ + GG+ Q L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 555 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXIL 713
+ I IATPGRL+D L++ K NLR + YLV+DEADR+L+M FE ++ I+
Sbjct: 243 IRGVEICIATPGRLLDMLDSNK-TNLRRVTYLVLDEADRMLDMGFEPQIRKIV 294
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 115 bits (276), Expect = 8e-27
Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 144 QASXVEQTP-TENVNEXTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG 320
+A V+ P TE+V T+ F+D + L E +++PS IQ+E+IP+AL G
Sbjct: 25 KAQPVDMRPKTEDV---TKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG 81
Query: 321 KDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGV 500
+DI+ A+ G+GKT AF +P L+ + + LIL PTRELA Q S+ + LG + V
Sbjct: 82 RDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 501 KCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 680
K V GG + + L+ HI++ TPGR++D L + VMDEAD++L+
Sbjct: 142 KVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLS 200
Query: 681 MDFEVEVDXILRVIP 725
+F ++ +L P
Sbjct: 201 PEFTPIIEQLLSYFP 215
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 114 bits (275), Expect = 1e-26
Identities = 69/169 (40%), Positives = 97/169 (57%), Gaps = 4/169 (2%)
Frame = +3
Query: 231 VDVLCEACEELK-WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ---ALL 398
+DV + E LK +K+P+ IQ P L G+D++G+AETGSGKT AF +P LQ L
Sbjct: 172 LDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS 231
Query: 399 ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIII 578
+N L+++PTRELA Q E +L +K V+ GG QA +K +II
Sbjct: 232 DNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVII 290
Query: 579 ATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXILRVIP 725
TPGRL+D L N + + YLV+DEADR+L+ FE ++ I+ P
Sbjct: 291 GTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTP 338
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 114 bits (274), Expect = 1e-26
Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
Frame = +3
Query: 279 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF----ALILTPTRE 446
++IQK+ IP AL G+DI+G A+TGSGKT AF +P+++ L AL+++PTRE
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRE 122
Query: 447 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 626
LA Q E +G +I+GG + + LS+ +I++ TPGRL+ H++ F
Sbjct: 123 LAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRLLQHIDQAVNF 181
Query: 627 NLRPLKYLVMDEADRILNMDFEVEVDXILRVIP 725
+ L+ L++DEADRIL+M F +D I+ +P
Sbjct: 182 DTSGLQMLILDEADRILDMGFRTTLDAIVSSLP 214
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 113 bits (273), Expect = 2e-26
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Frame = +3
Query: 195 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 374
E + TF D + L A + +++KP+ +Q E IP+AL GKD++ A TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 375 LPILQALL------ENPQRYFALILTPTRELAFQISEQFEALGA--SIGVKCAVIVGGMD 530
+PIL+ LL EN + FAL+L PTRELA Q+ E L A S ++ +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 531 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXI 710
Q +L P I+IATP R V H+ + L LK+LV+DEAD +L+ + ++ +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
Query: 711 LRVIP 725
R +P
Sbjct: 189 SRSLP 193
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 113 bits (271), Expect = 3e-26
Identities = 64/190 (33%), Positives = 105/190 (55%)
Frame = +3
Query: 156 VEQTPTENVNEXTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIG 335
VE T +E+VN + +F+++ + + L ++ PS +Q AI G+D+I
Sbjct: 9 VELTTSEDVNAVS-----SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 336 LAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVI 515
A++G+GKT F++ ILQ++ + + ALIL+PTRELA QI ALG + V+C
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 516 VGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEV 695
+GG + L H++ TPGR+ D + + R +K L++DEAD +LN F+
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKE 182
Query: 696 EVDXILRVIP 725
++ I R +P
Sbjct: 183 QIYDIYRYLP 192
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 110 bits (265), Expect = 2e-25
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Frame = +3
Query: 261 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFAL 425
L ++KP+ IQ +AIP G+D+IG+A+TGSGKT AF LP+ Q L+ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 426 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 605
I+TPTRELA QI + + + ++ GG + Q L + I++ TPGR++D
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query: 606 LENTKG--FNLRPLKYLVMDEADRILNMDFEVEVDXILRVI 722
L G NL YLV+DEADR+ ++ FE +V I+ I
Sbjct: 556 LSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 103 bits (247), Expect = 3e-23
Identities = 59/185 (31%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Frame = +3
Query: 174 ENVNEXTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 350
++V E D+ I TF D+ + L +++PS IQ+ AI L +D++ A++G
Sbjct: 7 DSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSG 66
Query: 351 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 530
+GKT F++ +LQ + + ++ ALIL PTRELA QI + ALG + V+C +GG
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 531 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXI 710
+ L H+++ TPGR+ D ++ + ++ V+DEAD +L+ F+ ++ I
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDI 185
Query: 711 LRVIP 725
+++P
Sbjct: 186 FQLLP 190
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 98.3 bits (234), Expect = 1e-21
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Frame = +3
Query: 213 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 392
F+D + L A + ++ PS++Q+ IP ++LG D++ A++G GKT F L LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 393 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALML---SK 560
+ L+L TRELAFQI ++ + V+ AV GG+++ SK
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 561 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL-NMDFEVEVDXILRVIP 725
PHI++ATPGRL + L K + +K+ V+DE D++L ++D ++ + R P
Sbjct: 173 SPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATP 227
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 97.5 bits (232), Expect = 2e-21
Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 18/167 (10%)
Frame = +3
Query: 267 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-------------- 404
+ +P+ +QK +IP+ G+D++ A+TGSGKT F PIL +
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMG 248
Query: 405 --PQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 572
P++ + LIL PTREL QI E+ V+ + GG D+ AQ + + +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 573 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXIL 713
+ ATPGRLVD ++ + +L +K+LV+DEADR+L+M FE ++ I+
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIV 354
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 95.9 bits (228), Expect = 5e-21
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Frame = +3
Query: 303 PVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYFALILTPTRELAFQISEQFEA 479
P+ G D+ A TGSGKT ++ +PI+Q L R +++ PTREL Q+++ FE
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 480 LGASIGVKCAVIVGGMDMVAQALMLSKKPH-----IIIATPGRLVDHLENTKGFNLRPLK 644
+ G++ G + + L+ + ++++TPGRLVDH+ N + F+L+ L+
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLR 287
Query: 645 YLVMDEADRILNMDFEVEVDXILRVI 722
Y+V+DEADR+L+ F+ VD ++ I
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 94.3 bits (224), Expect = 2e-20
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 12/158 (7%)
Frame = +3
Query: 276 PSKIQKEAIPVALL--GKDIIGLAETGSGKTGAFALPILQALLENPQRY-------FALI 428
P+ IQ +P L KD A+TGSGKT A+ LPI+Q L+ P+ +A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 429 LTPTRELAFQISEQFEALG---ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLV 599
+ PTREL QI L S + ++GG ++ + K +I+I TPGRL
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 600 DHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXIL 713
DHLENT+ ++ ++++V+DE DR+++M FE + IL
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 91.1 bits (216), Expect = 1e-19
Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Frame = +3
Query: 237 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-LENPQR 413
+LCE ++ + + IQ+ AIP +D++ A TGSGKT A+ PILQ L L P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 414 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ-ALMLSKKPHIIIATPG 590
Y A+I+ PTREL QI Q E L +K + + + + A L +K + I TP
Sbjct: 116 YRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 591 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDXIL 713
RLV ++ G + +++ VMDEADR+ F + D IL
Sbjct: 176 RLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHIL 214
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 86.6 bits (205), Expect = 3e-18
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Frame = +3
Query: 210 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG--KDIIGLAETGSGKTGAFALPI 383
+F++L + L + +K++KPSKIQ++A+P+ L +++IG +++G+GKT AFAL +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 384 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 563
L + + + A+ L P+RELA QI + +G VK A G D V + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ 232
Query: 564 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 680
I+I TPG ++D L + + R +K V+DEAD +L+
Sbjct: 233 --IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLD 268
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 79.8 bits (188), Expect = 4e-16
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Frame = +3
Query: 339 AETGSGKTGAFALPILQALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVK 503
A+TG+GKT AF L + +L+ N + ++IL+PTRELA QI E+ L G++
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 504 CAVIVGGMDMVAQALMLSK-KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 680
+ +GG + + + + +++IATPGRL DHL+N + ++DEADR+++
Sbjct: 143 VSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD 202
Query: 681 MDF 689
M F
Sbjct: 203 MGF 205
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 78.2 bits (184), Expect = 1e-15
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Frame = +3
Query: 207 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 386
++F+ + + L A +KK + +Q AIP+ L KD++ A TGSGKT A+ LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 387 QALLE---NPQRYFALILTPTRELAFQI--------SEQFEALGASIGVKCAVIVGGMDM 533
+ + ALI+ PTRELA QI + Q ++L + + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 534 VAQ--ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDX 707
+ A K P ++I TPGRL + L + + + L+ L++DEAD +++M F+ +
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDMGFQRTLQS 177
Query: 708 ILRVIP 725
I+ +P
Sbjct: 178 IISQLP 183
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 38.7 bits (86), Expect = 8e-04
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +3
Query: 270 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 449
+K K Q +AI G +I T SGK+ + +PILQ+LLE+ Q A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS-TAFFVFPTKSL 368
Query: 450 A-FQISEQFEALGASIGVKCAVI--VGGMDMVAQALMLSKKPHIIIATPGRLVDHL---E 611
A Q + L +K + G + + + +II P L +
Sbjct: 369 AQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNA 428
Query: 612 NTKGFNLRPLKYLVMDEADRILNMDFEVEVDXILR 716
N + + LK V+DEA + N F V V +LR
Sbjct: 429 NRWYYFFKNLKLFVLDEA-HVYNGIFGVHVAFVLR 462
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.3 bits (70), Expect = 0.073
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Frame = +3
Query: 279 SKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALIL 431
++IQ P+A ++I+ A TG+GKT L IL L + N Q + + +
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 432 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATP 587
P + L ++ F ++ A + G + Q + + II+ TP
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTP 629
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.096
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 282 KIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRYFALILTPTREL 449
K Q EAI L GKD+ L TG GK+ + LP A++E R L+++P L
Sbjct: 522 KNQLEAINGTLSGKDVFILMPTGGGKSLCYQLP---AVIEGGASRGVTLVISPLLSL 575
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.9 bits (64), Expect = 0.39
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Frame = +3
Query: 219 DLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQAL 395
++ +D+LC L ++ ++IQ P+A ++++ A TG+GKT L +LQ +
Sbjct: 260 EISSMDILCRKTF-LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
Query: 396 ---------------LENPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGM 527
L+ + F ++ + P + LA ++ E+ A +G+K + G M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 528 DMVAQALMLSKKPHIIIATP 587
+ + + I++ TP
Sbjct: 379 QLTKTEI---AETQILVTTP 395
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 276 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAF 455
P + Q+E + + + + +A T SGKT + ++ +L + + + PT+ L
Sbjct: 736 PDEWQRETLDILDRDESVFVVAPTSSGKT-FISFYAMEKVLRDNDDGVVIYVAPTKALVN 794
Query: 456 QISEQFEA 479
Q+S + A
Sbjct: 795 QLSAEVYA 802
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 345 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 458
TGSGKT F I A P LIL +ELA Q
Sbjct: 55 TGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQ 92
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 4.8
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +3
Query: 285 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALI--LTPTRELAFQ 458
++++ + V + +I + ETGSGKT A Q L E+ +I P R A
Sbjct: 497 VREQLLSVIRDNQVLIVVGETGSGKTTQLA----QFLYEDGYHRNGMIGCTQPRRVAAMS 552
Query: 459 ISEQF-EALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLR 635
++++ E +G +G + D+ ++ T G L+ E+ NL
Sbjct: 553 VAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIK------YMTDGVLL--RESLMQNNLE 604
Query: 636 PLKYLVMDEA-DRILNMD 686
++MDEA +R LN D
Sbjct: 605 KYSVIIMDEAHERSLNTD 622
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 512 NSWWYGHGGTSTNAIQETSHN 574
NSWWY + G S + +E HN
Sbjct: 322 NSWWYPN-GLSNSMPEEIQHN 341
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = -2
Query: 506 TFYTYACTKCFKLF*YLKCQFPCWCEY----KCKISLRVL-Q*CLKYGQGKGTCLTRTC 345
T T C KC+ L + C F C + C + L V+ + C K G ++++C
Sbjct: 1247 TSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSC 1305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,915
Number of Sequences: 5004
Number of extensions: 61846
Number of successful extensions: 264
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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