Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_N14
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 67 2e-12
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 5e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 52 8e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 50 4e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 46 7e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 41 2e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 36 0.008
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.50
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 8.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.2
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +3
Query: 138 IKDSDXLKPRLAEAGXKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 317
+ DS K + + KLVV+DF ATWCGPCK I PK ++ +
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61
Query: 318 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 407
A+E +++MP+F KNG+K++E GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 5e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 192 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 368
+ +D A WCGPCK I P ++A++ AS + +MPTFVF
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 369 KNGKKLDEFSGAN 407
+NGK++D +GAN
Sbjct: 82 ENGKQIDMLTGAN 94
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 52.0 bits (119), Expect = 8e-08
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +3
Query: 186 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 365
K+ V+DF A WCGPCK + P L+++ +E A + + ++PT V
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVL 94
Query: 366 VKNGKKLDEFSGANV 410
+ G++LD GA+V
Sbjct: 95 FRKGQELDRIVGADV 109
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 186 KLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTFV 362
K++++ F A WCG CK + P+ + A E+ SEY+I PT
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLN 99
Query: 363 FVKNGKKLDEFSG 401
KNGK++ ++SG
Sbjct: 100 VFKNGKQISQYSG 112
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 186 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 365
K V+++F A WCG CK + P +++A E S +I+ PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432
Query: 366 VKNGKKLD 389
K K++
Sbjct: 433 FKANDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +3
Query: 126 MSIHIKDSDXLKPRLAEAGXKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 305
MS+ I + + L ++++++F A W PCK + D+ A +
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59
Query: 306 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 407
A +++N++P FV + K L SGAN
Sbjct: 60 EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 177 AGXKLVVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXXASEYNINSM 350
A K +I+F ATWCG CK + P +E+ A E A +Y+I
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGF 96
Query: 351 PTFV-FVKNGKKLDEFSGA 404
PT + F +G + ++S A
Sbjct: 97 PTLIWFPPDGSEPVQYSNA 115
Score = 30.3 bits (65), Expect = 0.29
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 186 KLVVIDFMATWCGPCKMIGPKLDEI 260
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 35.5 bits (78), Expect = 0.008
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 2/122 (1%)
Frame = +3
Query: 48 PLSLVVFLLCIXNXCSXFXFQFXLPKMSIHIKDSDXLKPRLAEAGXKLVVIDFMATWCGP 227
P +FL C F + +I + + K A+ G LVV F A WCG
Sbjct: 6 PTLFTLFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKFVKAK-GPSLVV--FYAPWCGY 62
Query: 228 CKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXA--SEYNINSMPTFVFVKNGKKLDEFSG 401
CK + P ++A+ + A S+Y + PT V K S
Sbjct: 63 CKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSS 122
Query: 402 AN 407
+
Sbjct: 123 TD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.50
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 219 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLD 389
CG CK +GP D E A E +S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 390 E 392
E
Sbjct: 114 E 114
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 144 DSDXLKPRLAEAGXKLVVIDFMATWCGPCKMIGPKLDEIAA 266
+ D + RL EAG + +A CGPC + + D+IA+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIAS 466
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 519 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 611
+ +N +K+ +S+ L LIF VC LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,880
Number of Sequences: 5004
Number of extensions: 35288
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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