Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N09
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    33   0.036
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    28   1.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.4  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    27   4.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.5  

>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +2

Query: 458 EEIVGHIALSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDDKM-ELD 634
           +E +    L +RG+C++  KA +AQ  G + VI+ ++       L +++    DK+ E  
Sbjct: 138 DEAILDFLLVQRGKCTYFDKALEAQRLGFKGVIVGDNRSPSSFRLHYMV--APDKVDESK 195

Query: 635 VNIPAAFL 658
           V+IP+ F+
Sbjct: 196 VHIPSLFV 203


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 347 IRPAKDFGSVFNETLHFHKARLVPTVPLHSCSEIINHEEIVGHIALSER 493
           I P  +  + + ET  F++A ++ T+P  SC      EE VG   + ER
Sbjct: 188 ISPKTNVLARYPETTTFYRAEVIRTLPDGSCKLRFEGEEEVGKETVVER 236


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 533 HAGARAVIITESIDRWDDSLDHLIEMVDDKMELDVN---IPAAFLLGRS 670
           HA ARA    + ++   ++L  L++ +DD++E DV+   +P A +L  S
Sbjct: 208 HAEARAQEANDLLNEQRNALQSLLDSLDDQIEPDVSYLGVPLAAVLPSS 256


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 239 GANDLHFYDGSSTADVIAGDF 301
           GAN L  YD S   D + GDF
Sbjct: 385 GANQLRNYDSSLKPDYVVGDF 405


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +2

Query: 227  FVMPGANDLHFYDGSSTADVIAGDFFFEIIDPPELGYSYRIRPAKDFGSVFNETLH-FHK 403
            FVMP   +L+  D     D      +F+ +    L Y+Y       F   F++  H F  
Sbjct: 803  FVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVS 862

Query: 404  ARLVPTVPLHSCSEII 451
               +  + + S ++++
Sbjct: 863  GNELANLSISSTAQVL 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,465
Number of Sequences: 5004
Number of extensions: 55692
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)