Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_N09
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373... 50 2e-06
02_05_1270 + 35360375-35360494,35361361-35361519,35361611-353617... 48 1e-05
06_03_1035 + 27050104-27050422,27051975-27052519 43 2e-04
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 39 0.004
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 38 0.012
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 37 0.016
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 37 0.022
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 33 0.27
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 33 0.27
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 32 0.46
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 32 0.46
02_03_0356 + 18073794-18074052,18074054-18074163 32 0.46
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 31 0.81
08_01_0083 - 604175-605776 28 10.0
>06_03_1505 +
30635572-30635802,30636977-30637135,30637217-30637328,
30638004-30638123,30638264-30638415,30638938-30638972,
30639077-30639233,30639328-30639381,30639502-30639594,
30639685-30639827,30639939-30640009,30640323-30640453
Length = 485
Score = 50.0 bits (114), Expect = 2e-06
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +2
Query: 365 FG-SVFNETLHFHKARLVPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAG 541
FG + ++ H ++ RL+ P+ C+ E++ G I L +RG+C F KA A+ AG
Sbjct: 99 FGPQIVSKEKHANRTRLMLADPIDCCTS--PKEKVSGDILLVQRGKCKFTKKAKFAEAAG 156
Query: 542 ARAVIITESIDRWDDSLDHLIEMVDDKME--LDVNIPAAFL 658
A +II + L +MV +K E LD+NIPA L
Sbjct: 157 ASGIIIINHV-------HELYKMVCEKNETDLDINIPAVLL 190
>02_05_1270 +
35360375-35360494,35361361-35361519,35361611-35361722,
35362306-35362422,35362570-35362721,35362804-35362986,
35363627-35363661,35363809-35363965,35364052-35364105,
35364196-35364288,35364373-35364515,35364753-35364823,
35365234-35365317,35365408-35365532,35366918-35366938
Length = 541
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +2
Query: 365 FG-SVFNETLHFHKARLVPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAG 541
FG ++ ++ H ++ L+ P+ C +++ G + L +RG C F KA A+ AG
Sbjct: 62 FGPTIESKEKHANRTGLLLADPIDCCDPPT--QKVAGDVLLVQRGNCKFTKKAKNAEAAG 119
Query: 542 ARAVIITESIDRWDDSLDHLIEMVDDKME--LDVNIPAAFL 658
A A+II + L +MV D+ E LD+NIPA L
Sbjct: 120 ASAIIIINHV-------HELYKMVCDRNETDLDINIPAVLL 153
>06_03_1035 + 27050104-27050422,27051975-27052519
Length = 287
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +2
Query: 476 IALSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDDKMELDVNIPAAF 655
I L +RGEC F KA AQ AGA AV+I +++D ++D E + + ++IP+A
Sbjct: 100 ILLLDRGECYFALKAWNAQQAGAAAVLIADNVDEQLLTMDTPEESPETEYIDRISIPSAL 159
Query: 656 L 658
+
Sbjct: 160 V 160
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 39.1 bits (87), Expect = 0.004
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = +2
Query: 365 FGSVFNETLH-FHKARLVPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAG 541
FG+ +H K V PL CS + ++ +IA+++RGEC+F KA AQ G
Sbjct: 71 FGASVPRDIHEAQKTFAVLANPLDCCSN--STSKLTNYIAIAQRGECAFTAKAKIAQTGG 128
Query: 542 ARAVIITESIDRWDDSLDHLIEMV--DDKMELDVNIPAAFLLGRSG 673
A +++ +D+ + L +MV D+ ++V IP + +G
Sbjct: 129 AVGLLVI------NDN-EELYKMVCSDNDTSINVTIPVVMIPQSAG 167
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 401 KARLVPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAGARAVIITESID 574
K + V P C++ + + IA++ERGEC+F+ KA A+ GA A+++ D
Sbjct: 94 KRKAVVPAPKTGCAK--SSAPLASSIAVAERGECTFLEKAKTAESGGAAALLLINDED 149
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 37.1 bits (82), Expect = 0.016
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +2
Query: 383 ETLHFHKARLVPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAGARAVIIT 562
+ LH +V T L CS+ + + ++V I LS EC F KA AQ+AGA AV++
Sbjct: 114 KVLHCKTEEVVNTQVL--CSKKVQNVKVVKLIPLSGT-ECYFTTKAWNAQNAGAAAVLVV 170
Query: 563 ESIDRWDDSLDHLIEMVDDKMELDVNIPAAFLLGRSG 673
+ ++D+ + + +E ++ IP+ + + G
Sbjct: 171 DDKSEPLITMDNPDDAGTEHLE-NITIPSVLITKKLG 206
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 36.7 bits (81), Expect = 0.022
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 476 IALSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDDKMEL-DVNIPAA 652
+ L +RG C F K AQ AGA AV++ + +D ++D E D L ++ +P+A
Sbjct: 96 VLLVDRGGCYFALKTWHAQLAGAAAVLVADGVDEPLLTMDSPEEETPDMAFLANITVPSA 155
Query: 653 FLLGRSG 673
+ + G
Sbjct: 156 LVTKQFG 162
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 482 LSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDDKMELDVNIPAAFL 658
L +RG+C F KA AQ+AGA A+++ + ++D E + ++ IP+A +
Sbjct: 100 LVDRGDCFFTKKAWNAQNAGAAAILVADDKTEPLITMDTPEESGNTDYLENITIPSALI 158
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +2
Query: 482 LSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDDKMELDVNIPAAFL 658
L +RG+C F KA AQ+AGA A+++ + ++D E + ++ IP+A +
Sbjct: 100 LVDRGDCFFTKKAWNAQNAGAAAILVADDKTEPLITMDTPEESGNTDYLENITIPSALI 158
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 482 LSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEMVDD---KMELDVNIPAA 652
L +RG C F K AQ+AGA AV++ + D ++D + DD K ++ IP+A
Sbjct: 99 LIDRGNCLFAKKVWNAQNAGASAVLVVDDKDEPLITMD--LPREDDEAAKYIQNITIPSA 156
Query: 653 FL 658
+
Sbjct: 157 LI 158
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 482 LSERGECSFVFKATKAQHAGARAVIITESIDRWDDSLDHLIEM 610
L +RG+C F K AQ AGA AV++ DD L+ LI M
Sbjct: 95 LVDRGDCYFTTKGWNAQTAGAAAVLVA------DDRLEPLITM 131
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 625 GARRKHSCSIPSRPQWSHDTAYAETFKKKIC 717
GA SCS +P+ S D +YAE+ + K+C
Sbjct: 9 GAGATTSCSASKKPRASTDASYAESLRSKLC 39
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 31.5 bits (68), Expect = 0.81
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 425 PLHSCSEIINHEEI--VGHIALSERGECSFVFKATKAQHAGARAVIITESID 574
PL +CS + V AL RG C F K AQ+AG +AVI+ + D
Sbjct: 45 PLDACSPLRKKAANGPVSPFALVIRGGCQFDDKVRNAQNAGFKAVIVYDDED 96
>08_01_0083 - 604175-605776
Length = 533
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 413 VPTVPLHSCSEIINHEEIVGHIALSERGECSFVFKATKAQHAGARA 550
V T P+ + + IV + E EC F F ATKA+ ARA
Sbjct: 228 VETSPVPIPMPVGKLQHIVRRLERPEVQECFFTFSATKARKLKARA 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,511,494
Number of Sequences: 37544
Number of extensions: 334770
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -