Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N09
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical pr...    60   1e-09
U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical pr...    58   1e-08
Z68882-16|CAE17745.1|  118|Caenorhabditis elegans Hypothetical p...    31   0.97 
U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine rec...    28   6.8  

>Z47073-1|CAA87371.3|  931|Caenorhabditis elegans Hypothetical protein
            ZC506.1 protein.
          Length = 931

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
 Frame = +2

Query: 302  FFEIIDPPELGYSYRIRPAKDFGSVFNETLHFHKARLVPTVPLHSCSEIINHEEIVGHIA 481
            F +I++ P  G  Y    A  FG     T      R   T+P  +C +I+N +++VG IA
Sbjct: 633  FVQILNRPYYGKPYLRGSAAQFGRDIAATKAL-VGRAAKTIPFRACDKILNADQVVGKIA 691

Query: 482  LSERGECSFVFKATKAQHAGARAVIIT--ESIDRWDDSLDHLIEMVDDKMELDVNIPAAF 655
            + ER +C F  KA   Q AGA  +++   ES  ++          VD   + D+ IP+ F
Sbjct: 692  VVERSDCVFQDKARFVQQAGAIGMVVIDHESNSQYVGDRPTFSMAVDKDGKDDIGIPSIF 751

Query: 656  LLGRSG 673
            L    G
Sbjct: 752  LFRAEG 757


>U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical
           protein T07F12.2 protein.
          Length = 220

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = +2

Query: 296 DFFFEIIDPPELGYSYRIRPAKDFGSVFNETLH--FHKARLVPTVPLHSCSEIINHEEIV 469
           +  F + +P  L Y+Y+++ A   G  F +  +  F    +V   P+H C E + +E   
Sbjct: 118 NMLFTVTEPYTLAYTYQMKHAFMLGVHFPDGANKTFRNLEMVLADPVHGC-EALRNEIFA 176

Query: 470 GHIALSERGECSFVFKATKAQHAGARAVIITES 568
             + L ERGECSF  KA   + AGA  +++T+S
Sbjct: 177 PSVILMERGECSFTVKALNGEKAGATVIMVTDS 209


>Z68882-16|CAE17745.1|  118|Caenorhabditis elegans Hypothetical
           protein C47E12.13 protein.
          Length = 118

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 305 FEIIDPPELGYSYRIRPAKDFGSVFNETLHFHK 403
           FEII+ PEL   + +R  K+F +V NE   F +
Sbjct: 47  FEIINEPELRIMFYVRTGKNFRNVINEGSKFFR 79


>U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 8 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 494 LSQIVQCAQLFLHG*LSQNNYATALW-VLNEPCGSVGFH*IQIRNLLLVLFYM 339
           L   + CAQ F+   L+ N  ++ LW V +E    + F  I I NL+   F++
Sbjct: 110 LLNYLHCAQPFIQIFLTTNRMSSVLWPVDHEKFWKINFSRILILNLIAPFFFI 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,052
Number of Sequences: 27780
Number of extensions: 310582
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)