Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N03
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    30   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   4.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   6.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.2  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 396 ELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGN-NTTPSYEYRIMSNSNTREASP 569
           +LQ QQ+   E+    +T +QQ  S    G F  N + NT P+    I+SNS      P
Sbjct: 114 KLQVQQEAQSEVYQRASTNTQQQVSNVSHGNFKPNSSVNTEPNTS--ILSNSKYAGIKP 170


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 358 APQAPPVAPRSPILQPLP 305
           AP APP+ P +PI  PLP
Sbjct: 443 APAAPPLPPSAPIAPPLP 460


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 556  GKLHLSNNGGTH--QEV*THNKHLHRRRXISQIKKAIKTINNRTV 684
            G+ H S    TH  QE  THN+    RR +   KK + + NNR V
Sbjct: 1020 GRPHFSVFNYTHHMQEEKTHNRLPWHRRGMISYKKMVLSKNNRWV 1064


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +3

Query: 384 SSAGELQHQQQLNEEIGTSTATT---SQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
           S++  +  Q+   +   T  A T    Q +  Y  S    S  NN   +    I S+SNT
Sbjct: 197 SASLNVDDQRDFEQVYSTDVAITYRNGQALSYYNGSVRQASMNNNVNNNKSKDIWSSSNT 256

Query: 555 REASPQQQWWYS 590
            E    +++W S
Sbjct: 257 EEREQIREFWLS 268


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +3

Query: 432  GTSTATTSQQM-------YSYKMSGGFTSNGNNTTPSYEYRIMSNSN 551
            GTST +T +Q        Y+Y  +GGFT  GNNT  +  Y   + +N
Sbjct: 1499 GTSTWSTVRQWNGSATYNYTYYTTGGFT-GGNNTNVTGLYPSSAGAN 1544


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 352 QAPP-VAPRSPILQPLPVVNQFLYVFCPFRGRLRY 251
           QAPP   P+ P   P P+ N    V+ P  GRL Y
Sbjct: 49  QAPPHTNPQGP--PPFPLFNSISPVYDPATGRLLY 81


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 300 TTGSGCRMGERGATGGAWGARDDASWWPSS---AGELQHQQQ-LNEEIGTSTATTS 455
           TT +G   G   A+GG +G  ++ +  PS+    G   +QQ+      G++T TT+
Sbjct: 291 TTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQKPAFSGFGSTTNTTN 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,393
Number of Sequences: 5004
Number of extensions: 52950
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)