Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_N03
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical p...    30   1.4  
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    29   2.5  
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    29   2.5  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    29   2.5  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    29   2.5  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    29   2.5  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    29   2.5  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 453  SQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTREASPQQQWWYSS 593
            S+QM S  M+G   SN + T P     +   S T    P++ W+ S+
Sbjct: 887  SRQMNSRNMNGYVKSNNSETNPHLTQMLDLFSETERLKPEESWYCST 933


>Z81030-11|CAE17704.1|  100|Caenorhabditis elegans Hypothetical
           protein C01G10.15 protein.
          Length = 100

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 438 STATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTREASPQQQWWYSSGGVDS 608
           STA  +  +Y Y  + G+ +N NN   +Y Y    N+N    + Q  ++Y + G ++
Sbjct: 15  STAN-AYYLYYYYPNNGYNNNNNNGYTTYYY--YPNNNNNNNNGQTYYYYDNNGYNN 68


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +3

Query: 399 LQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNTREASPQQQ 578
           LQ QQQL+++   +    +Q   S +   G ++ G ++TP    ++   + T +A  QQQ
Sbjct: 305 LQQQQQLHQQRAAAQQAQAQNNASQQRPSGASTPGLSSTP----QLNDLTQTMQAQLQQQ 360

Query: 579 WWYSSGGVDSQQA 617
                    +QQA
Sbjct: 361 LLLQQQQAQAQQA 373


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
            cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 384  SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
            S  G   +QQQ N+ +       S Q Y    + GF  NGNN       R  +N ++
Sbjct: 965  SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 1019


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 384 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
           S  G   +QQQ N+ +       S Q Y    + GF  NGNN       R  +N ++
Sbjct: 723 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 777


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 384 SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
           S  G   +QQQ N+ +       S Q Y    + GF  NGNN       R  +N ++
Sbjct: 659 SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 713


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in germ
            line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 384  SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
            S  G   +QQQ N+ +       S Q Y    + GF  NGNN       R  +N ++
Sbjct: 888  SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 942


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
            line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 384  SSAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSNT 554
            S  G   +QQQ N+ +       S Q Y    + GF  NGNN       R  +N ++
Sbjct: 965  SGPGHYHYQQQSNQNLSRPQRPGSNQGYQMNNNRGF--NGNNQQQHQNRRSFNNQSS 1019


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 387 SAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYE 527
           +A + Q QQQ   ++    AT +Q M      GG   +  N++P Y+
Sbjct: 192 AAMQQQRQQQQQNQVQQMLATQAQLMDEISDGGGTNDSDRNSSPFYQ 238


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 387 SAGELQHQQQLNEEIGTSTATTSQQMYSYKMSGGFTSNGNNTTPSYE 527
           +A + Q QQQ   ++    AT +Q M      GG   +  N++P Y+
Sbjct: 192 AAMQQQRQQQQQNQVQQMLATQAQLMDEISDGGGTNDSDRNSSPFYQ 238


>U64601-4|AAB04574.1|  163|Caenorhabditis elegans Hypothetical
           protein M03F4.4 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 478 ILYEYIC*-LVVAVLVPISSFNC--CWCCSSPALLGHHEASSRAPQA 347
           +L+  +C  LV AVL+P+  F       CSS   L H+ +SS +PQA
Sbjct: 116 LLFANVCNALVAAVLLPLRMFRLHKIASCSSFNTLPHYISSSSSPQA 162


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 397 SPALLGHHEASSRAPQAPPVAPRSPILQPLPVVNQF 290
           SP L     A  +AP  P +APR  + Q  P  N F
Sbjct: 434 SPTLNEMRAAQGQAPPIPSMAPRGTLPQANPFANPF 469


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 397 SPALLGHHEASSRAPQAPPVAPRSPILQPLPVVNQF 290
           SP L     A  +AP  P +APR  + Q  P  N F
Sbjct: 432 SPTLNEMRAAQGQAPPIPSMAPRGTLPQANPFANPF 467


>Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical
           protein F59F3.2 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 393 GELQHQQQLNEEIGTSTATTSQQMYSYKMSGG-FTSNGNNTTPSYEYRIMSNSNTREASP 569
           G  Q   +      +ST+T ++Q      S    TSN N+    YE  +  +   R+   
Sbjct: 288 GYCQCPPREGSSFSSSTSTLNRQSVKVSTSRNRLTSNNNDAVDDYEAEVERHVTPRQQQQ 347

Query: 570 QQQ 578
           QQQ
Sbjct: 348 QQQ 350


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 450 TSQQMYSYKMSGGFTSNGNNTTPSYEYRIMSNSN 551
           TS  +++YKM G   SN    +P   YR+  NS+
Sbjct: 83  TSVGVFTYKMQGNCDSNPYRISPFTGYRLPMNSS 116


>AC006665-3|AAF39905.1|  605|Caenorhabditis elegans Hypothetical
           protein H27M09.3 protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
 Frame = +3

Query: 270 KGQNT*RNWLTTGSGCRMGERGATGG------AWGARDDASWWPSSAGELQHQQQLNEEI 431
           K  N   N+     G   GE G  G         GA DD S    S G+L       E+ 
Sbjct: 491 KSNNFSFNFFGNSKGTSAGEGGGEGNFDFNFDGIGAGDDGSNNGGSTGDLDFLNYDGEDE 550

Query: 432 GTSTATTSQQMYSYKMSGGFTSNGNNTTPSYEY 530
           G  +  T    + +  +G     G + + ++ +
Sbjct: 551 GKGSGNTQSDPFGFASNGNAAGGGGDGSFNFNF 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,825
Number of Sequences: 27780
Number of extensions: 310721
Number of successful extensions: 1087
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)