Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M24
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   236   2e-63
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   236   2e-63
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.7  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   9.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  236 bits (577), Expect = 2e-63
 Identities = 110/207 (53%), Positives = 140/207 (67%)
 Frame = +1

Query: 37  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 216
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 217 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 396
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 397 XXXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIXRF 576
                       E +++GP  F  +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 577 PGYDAESKKFNAEVHRAHIFGLHVAEY 657
           PG+D E+++ + E  R +I+G HVAEY
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEY 207


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  236 bits (577), Expect = 2e-63
 Identities = 110/207 (53%), Positives = 140/207 (67%)
 Frame = +1

Query: 37  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 216
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 217 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 396
           TCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                  
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 397 XXXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIXRF 576
                       E +++GP  F  +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180

Query: 577 PGYDAESKKFNAEVHRAHIFGLHVAEY 657
           PG+D E+++ + E  R +I+G HVAEY
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEY 207


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 367 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 275
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 165  FVLVLNNEAFTSII--ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVIG 7
            F L LN + F+ ++  + FPF +P++      E+  +LHN  +    + S K  G
Sbjct: 1136 FELTLNYD-FSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSSSSKTFG 1189


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 165 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVI 10
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V+
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVV 523


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 205 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 327
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,162
Number of Sequences: 5004
Number of extensions: 54160
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)