Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M22
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 82 3e-16
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 33 0.27
01_01_0043 - 321810-321973,322054-322846 31 0.62
01_01_0044 - 326337-326500,326618-327398 31 0.82
01_05_0612 - 23652121-23652400,23653031-23654427 31 1.1
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 31 1.1
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 1.4
05_02_0131 - 6919143-6920125,6920334-6920529 29 2.5
05_02_0128 - 6890918-6891900,6892929-6893124 29 2.5
11_06_0754 - 26935647-26937780,26940890-26941827 29 3.3
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 4.4
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 29 4.4
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 5.8
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 28 5.8
02_03_0383 + 18385109-18385307,18385431-18385516,18385565-183857... 28 7.7
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 82.2 bits (194), Expect = 3e-16
Identities = 42/112 (37%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Frame = +2
Query: 296 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 475
+G+Q+++P+RG + LK+ GDLGQ++ Y+ D +SI + SNVVINL+GR+YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 476 TKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYLNAEEHPKPLVLKKPSA 628
T+N+ +++V+ ++A I +E G+ RFI +S L A +L+ +A
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASASSPSRMLRAKAA 112
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 407 EESIAKAVRYSNVVINLVGRDYETKNF----KYNDVHVDGVRRIARICREEGVERFIHLS 574
+E + KA+R + V +L K + ++V+++G + C E GV R +++S
Sbjct: 98 KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157
Query: 575 YLNAEEHPKPLV 610
N +P+V
Sbjct: 158 TYNVVFGGEPIV 169
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 31.5 bits (68), Expect = 0.62
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 203 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 370
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62
Query: 371 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 460
G L L D S+ +AVR ++VVI+ V
Sbjct: 63 GVTLLHG-DLHDHASLLRAVRDADVVISAV 91
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 31.1 bits (67), Expect = 0.82
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +2
Query: 203 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 370
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60
Query: 371 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 463
G L L D S+ AVR ++VVI+ +G
Sbjct: 61 GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 500 VHVDGVRRIARICREEGVERFIHLSYL-NAEEHPKPLVLKKPSAWKISKYLG 652
+++DG R I +CR G HL + + + L + +P A K+ KY+G
Sbjct: 170 INIDGSRNIGILCRNNGEFVVAHLGGMTSVGDGGSGLPITRPVAAKLCKYVG 221
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 30.7 bits (66), Expect = 1.1
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Frame = +2
Query: 203 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 364
T + S N V G TG +GR++ G L+ P D+ + K+
Sbjct: 2 TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61
Query: 365 DLGQVLFTPYH--LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARIC 538
L T + + D ES+ A+R ++VVI+ VG V +DG ++
Sbjct: 62 SLVASGATIVYGDMNDRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAI 113
Query: 539 REEG-VERFIHLSY 577
+E G V+RF+ Y
Sbjct: 114 KEAGNVKRFVPSEY 127
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 209 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 370
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 521 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 625
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 521 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 625
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 545 EGVERFIHLSYLNAEEHPKPLVL 613
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 307 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 173
+ ++FS A+ SDK EN G + ++ + TS KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 233 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 403
+A V G +G VC +L G +IL R + ++ +C +L ++F +L
Sbjct: 90 LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149
Query: 404 DEESIAKAVRYSN 442
D S A RY N
Sbjct: 150 DGNSRASLARYIN 162
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 404 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLN 583
D + + KAVR ++VVI++VG Y+DV + ++ IA I ++RFI + N
Sbjct: 78 DHDLLVKAVRAADVVISVVG---------YHDVG-EQMKIIAAIKEAGNIKRFIPSDFGN 127
Query: 584 AEEH 595
+H
Sbjct: 128 DADH 131
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Frame = +2
Query: 242 VFGCTGFVGRYVCNKLGKIG--TQLIL--PYRGDFYDAQRLKVCGDLGQVLFTPYHLLDE 409
V G TG++GRY+ + T +++ P D A L+ D G L L
Sbjct: 13 VIGGTGYIGRYIVAASAREDHLTSVLVRDPAPADPAKAAVLQGFRDSGATL-VKGDLYGH 71
Query: 410 ESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAE 589
+S+ A++ ++VVI+ VG Y + D R I+ I V+RF Y N
Sbjct: 72 QSLVAAIKSADVVISAVG---------YAQL-ADQTRIISAIKEAGNVKRFFPSEYGNDV 121
Query: 590 EH 595
+H
Sbjct: 122 DH 123
>02_03_0383 +
18385109-18385307,18385431-18385516,18385565-18385765,
18385894-18386058,18386168-18386494
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +2
Query: 332 FYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVD 511
FY+ R ++ ++G + T ++ E ++ KAV+ V++ D E ++ + V
Sbjct: 171 FYETLRAELGSEVGVTILTHGYVESEMTMGKAVQKDGVLV----VDQEARDVQIGVFPVG 226
Query: 512 GVRRIARICREEGVER 559
GV + R+ +G+ R
Sbjct: 227 GVGAMCRVAM-DGIRR 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,978
Number of Sequences: 37544
Number of extensions: 317745
Number of successful extensions: 697
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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