Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M18
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    28   0.73 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.0  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   3.0  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   6.8  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    24   9.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    24   9.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.0  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.0  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    24   9.0  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 141 LEVLCSCVDVVQKWYHPW 194
           +E +C   DV+ +WY PW
Sbjct: 471 VEYVCPFADVLGRWYEPW 488


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 141 ATDVMLLHLSPYILMCAISHP-SEHEHCHVINLLLGHXCIITLQ 13
           ATD+  L    Y  +    HP   H  C   N+L G+ C++ LQ
Sbjct: 860 ATDIFALGCIFYYTLTGGMHPFGSHYDCEG-NILKGNYCLVHLQ 902


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 210 PGWVQIKCELRILSQFGFNLNPDWELPLKKDTQNQPLKEGVRDMLVKHHLFSWD 371
           P W Q KCE+ + S F          P+K+D +N  L+         +H F W+
Sbjct: 57  PRWTQAKCEISLTSPFH---------PIKQDLKNGKLRYVANSF--PYHGFIWN 99


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 216 WVQIKCELRILSQFGFNLNPDWELPLKKDTQNQPLKEGVRDMLVKHHLFSWD 371
           W Q++C + IL   G  L P   +    D +  P K  + DM  ++ L  +D
Sbjct: 284 WHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPTKP-IYDMASEYPLILYD 334


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 356 MVFNKHISYTFLQWLILCIFFQWKLPIGVQIETKL 252
           +++ K I  T  QW I  + F W +P    I  ++
Sbjct: 125 LIWGKQIGKTTGQWRIGKVAFAWPIPAHTHIVVRV 159


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 72  AQMDVKLRTLICMGLNEEALHLWLEVLCSCVDVVQKWYHPWSFINSPGWVQIKCEL 239
           A+ ++  R  +     EE L LW E+     DV Q      S  N P  V +  EL
Sbjct: 186 AEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYEQLLESHTNRPNDVYVTQEL 241


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 184 YHF*TTSTQEHNTSSHRCNASSFKPI 107
           YH  T+S    ++SSH  ++ S KPI
Sbjct: 424 YHNSTSSRSSSHSSSHSLSSLSSKPI 449


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 356 MVFNKHISYTFLQWLILCIFFQWKLPIGVQIETKL 252
           +++ K I  T  QW I  + F W +P    I  ++
Sbjct: 125 LIWGKQIGKTTGQWRIGKVAFAWPIPAHTHIVVRV 159


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 124 KHYICGLKYCVLVLMSFKNGIIHGHL*IRLDGYRSNVNYVYFLSLVSI*TPIG 282
           + Y  G +    +++    G+I   L + +    S  N+    +LVS  TPIG
Sbjct: 456 EQYNWGYQIMPQIIVGIGGGVIANLLTVAVQTVVSTENFAIVTALVSTVTPIG 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,217
Number of Sequences: 5004
Number of extensions: 41594
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)