Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M16
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    46   8e-06
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    38   0.001
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    36   0.008
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   6.7  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.7  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
 Frame = +2

Query: 287 NPPVLLCHGLADSATSFRPLIKLMPEKFY--FIGIDLPGCGKSDRFPPGLMINIYDLVYA 460
           +PPVL+ HGL  S  ++R L K    K       ID    G S    P   ++   +   
Sbjct: 20  HPPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAP---LSYSAMALD 76

Query: 461 VNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPEKFPKWYK 640
                K  + D  +++GHS+GA    +  L +P+K+ KL+ +D   +Y   P  +  +++
Sbjct: 77  AFQFMKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSPWYQDLPRDYGAYFR 136

Query: 641 R 643
           +
Sbjct: 137 K 137


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +2

Query: 503 LVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPEKF 625
           LVGHS+G  +  +Y + YPE++ KL+ + P+   A+P   F
Sbjct: 176 LVGHSMGGYLSAVYAMQYPERVEKLLLVSPV---AIPENPF 213


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
 Frame = +2

Query: 308 HGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYDLV-------YAVN 466
           HGL    + F+ ++   P        D  GCG S +  P   I   D +           
Sbjct: 106 HGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLSRQAFPNQRIGSVDQLTTKGLSKLTYK 165

Query: 467 AVAKHFRWDA-FNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDP-INFYAVPPEKFPKWYK 640
            + K F  +  F L+GHS+GA I    + +   + T L+ ++P I F +       +  K
Sbjct: 166 VLEKLFPENTQFILIGHSMGATIASRVSKMLQTRCTALLLLNPKIRFTSKEISMIVRLRK 225

Query: 641 --RHFVDYYEQYDKLNAPKSKGKVTTVKEAI 727
               F+  Y   D+ +  +S     ++ + I
Sbjct: 226 TPNAFISLYRLLDRFHGLRSSSVTRSLSKNI 256


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +1

Query: 247 LGPDVRGGLGRLLQSPGSALPWPSRLRDQLPPSNQIDAREVLFYRH 384
           +G    GGLG LL        W    + Q   + QI ARE  FYRH
Sbjct: 103 IGTIASGGLGWLLGPSIGRKIWTLLHKSQ---ARQIAAREQEFYRH 145


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 503 LVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPEKFPKWYKRHFVDYYE 664
           L+GHS+G I+ +     +  K      ++ +   A P    P  + RH V++YE
Sbjct: 260 LLGHSMGGIVAQA---TFTMKNYVDGSVNTLITLATPHAMAPLPFDRHLVEFYE 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,930
Number of Sequences: 5004
Number of extensions: 59698
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)