Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M16
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88315-14|AAB42366.2| 355|Caenorhabditis elegans Hypothetical p... 59 3e-09
U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical p... 54 1e-07
U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical p... 54 1e-07
U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z71181-5|CAA94898.1| 355|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z81038-8|CAB02763.1| 328|Caenorhabditis elegans Hypothetical pr... 31 0.89
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 31 0.89
AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical ... 31 1.2
U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical ... 30 1.6
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 30 2.1
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 30 2.1
Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine re... 29 4.7
Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 28 8.3
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 28 8.3
>U88315-14|AAB42366.2| 355|Caenorhabditis elegans Hypothetical
protein C37H5.2 protein.
Length = 355
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +2
Query: 293 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 466
P++L HG + IK + + IDLPG G+S R F +++ A+
Sbjct: 73 PIVLIHGFGAGVALWGSAIKRLAQFQNVYAIDLPGFGRSSRTKFSTDPETAEKEMIEAIE 132
Query: 467 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPEKFPKWYKR 643
+ NLVGHS G + Y L YP+++ LI DP F V P K KR
Sbjct: 133 QWRVKMNLEKMNLVGHSFGGYLSTSYALKYPKRIENLILADPWGFTDVDPSFLEKLTKR 191
>U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical
protein C37H5.3b protein.
Length = 359
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +2
Query: 293 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 466
P++L HG + IK + + DLPG G+S R F +++ ++
Sbjct: 77 PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIE 136
Query: 467 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPE 619
+ NLVGHS G + Y L YP+++ LI DP F + PE
Sbjct: 137 QWRDKMNLEKMNLVGHSFGGYLATSYALKYPKRVENLILADPWGFNEMDPE 187
>U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical
protein C37H5.3a protein.
Length = 444
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +2
Query: 293 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSDR--FPPGLMINIYDLVYAVN 466
P++L HG + IK + + DLPG G+S R F +++ ++
Sbjct: 162 PIVLIHGFGAGVALWGSAIKRLAQFQTVHAFDLPGFGRSSRPKFSSDPETAETEMIDSIE 221
Query: 467 AVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLIEIDPINFYAVPPE 619
+ NLVGHS G + Y L YP+++ LI DP F + PE
Sbjct: 222 QWRDKMNLEKMNLVGHSFGGYLATSYALKYPKRVENLILADPWGFNEMDPE 272
>U00052-2|AAK95881.1| 404|Caenorhabditis elegans Hypothetical
protein K02F3.6 protein.
Length = 404
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +2
Query: 233 YIQVPWGRMCVVAWGDCCNPPVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSD 412
YI++ R+ V G P +L HG + S+R +K +K+ + ID G SD
Sbjct: 121 YIKLKKVRLHYVQTGSDDKPLMLFIHGYPEFWYSWRFQLKEFADKYRCVAIDQRGYNLSD 180
Query: 413 RFPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLI 580
+ +I +L + V + +D +V H G ++ + YPE + KLI
Sbjct: 181 KPKHVDNYSIDELTGDIRDVIEGLGYDKAIVVAHDWGGLVAWQFAEQYPEMVDKLI 236
>Z71181-5|CAA94898.1| 355|Caenorhabditis elegans Hypothetical
protein K07C5.5 protein.
Length = 355
Score = 31.5 bits (68), Expect = 0.67
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = +2
Query: 233 YIQVPWGRMCVVAWGDCCNPPVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGCGKSD 412
++Q+ RM V G +L+ HG + S+R ++ I ID+ G +D
Sbjct: 58 FVQLKNIRMHYVEEGPADGDVLLMVHGFPEFWYSWRFQLEHFKHTHRCIAIDMRGYNTTD 117
Query: 413 RFPPGLM-INIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKLI 580
R P G+ N+ LV + + L H GAI+ +++ + +L+
Sbjct: 118 R-PSGISDYNLTHLVEDIRQFIEILELKRVTLAAHDWGAIVCWRVAMLHSNLIDRLV 173
>Z81038-8|CAB02763.1| 328|Caenorhabditis elegans Hypothetical
protein C25A1.12 protein.
Length = 328
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 395 GCGKSDR--FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKL 568
G G+S R F I ++V + K + ++GH+ G + Y L P ++
Sbjct: 150 GFGRSSRSRFSDDNAIAELEMVEVMEDWRKAMGIEKMYIIGHAFGGYLASAYALENPSRV 209
Query: 569 TKLIEIDPINF 601
LI +DP F
Sbjct: 210 AHLILVDPWGF 220
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.89
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Frame = +2
Query: 293 PVLLCHGLADSATSFRPLIKLM--PEK--------FYFIGIDLPGCGKSDRFPPGLMINI 442
P+L+ HG + F I L+ P+K F I +PG G SD+ P +
Sbjct: 144 PILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQ-PKKTGFSQ 202
Query: 443 YDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLVYPEKLTKL 577
+ ++ F L G GAII L VYP+ + L
Sbjct: 203 LACARVFRKLMLRLGYNKFYLQGGDWGAIITSLLTKVYPQNVMAL 247
>AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical
protein Y73C8B.3 protein.
Length = 308
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 296 VLLCHGLADSATSFRPL-IKLMPEKFYFIGIDLPGCGKSDRFPPGLMINIYDLVYAVNAV 472
V+ HG S F+ + KL K FIG++ PG ++ +P INI Y+ NA+
Sbjct: 40 VVAFHGSPGSHNDFKYIRSKLDDLKIRFIGVNYPGFTFTNEYPDQKHINIERQNYS-NAL 98
Query: 473 AKHFRWDA-FNLVGHSLG 523
D +GHS G
Sbjct: 99 LDELGIDGKMAYIGHSRG 116
>U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical
protein C06E2.5 protein.
Length = 137
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 175 KFVKFLKIYFR--NEFIRKXMVHTGSLGPDVRGGLGRLLQSPGSAL-----PWPSRLRDQ 333
KF L+ Y R NEFIR+ VH + G ++Q P +A+ P R R
Sbjct: 42 KFAITLQSYIRRRNEFIRRMRVH--EMREQAEAGPSEIVQQPSNAVGATEEPAAKRARTD 99
Query: 334 LPPSNQIDAREV 369
P N+ + EV
Sbjct: 100 TPEPNKENTTEV 111
>AF077529-2|AAC26254.1| 292|Caenorhabditis elegans Hypothetical
protein C09E8.2a protein.
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Frame = +2
Query: 293 PVLLCHGLADSATSFRPLIKLMPEKFYFIGIDLPGC--GKSDRFPPGLM---INIYDLVY 457
PV++ HG+ + A+ F + + K Y ++ G G S R P GL+ N +
Sbjct: 65 PVIIVHGITNKASRFGGTVAYLKSKGY-KNSEIYGTTWGDSGRTPVGLVDMKCNYVKQIR 123
Query: 458 AVNAVAKHFRWDAFNLVGHSLGAIIGK 538
A+ + + +++G+S+G+ + +
Sbjct: 124 AMIIAVRQYTGQKVDVIGYSMGSPLAR 150
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 527 IIGK--LYNLVYPEKLTKLIEIDPINFYAVPP--EKFPKWYKRHFVDYYEQYDKLNAPKS 694
+IGK L+ +V L+ ++ + +N + P PKW KR FVD+ +Y + P+
Sbjct: 321 LIGKYLLFTMVLVT-LSVVVTVVTLNVHYRSPTTHTMPKWMKRLFVDFLPKYLLMTRPQP 379
Query: 695 KG 700
G
Sbjct: 380 PG 381
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 527 IIGK--LYNLVYPEKLTKLIEIDPINFYAVPP--EKFPKWYKRHFVDYYEQYDKLNAPKS 694
+IGK L+ +V L+ ++ + +N + P PKW KR FVD+ +Y + P+
Sbjct: 321 LIGKYLLFTMVLVT-LSVVVTVVTLNVHYRSPTTHTMPKWMKRLFVDFLPKYLLMTRPQP 379
Query: 695 KG 700
G
Sbjct: 380 PG 381
>Z81105-4|CAB03219.1| 299|Caenorhabditis elegans Hypothetical
protein R05D7.4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +2
Query: 287 NPPVLLCHGLADSATSFRPLIKLMPEKFY--FIGIDLPGCGKSDRFPPGLMINIY-DLVY 457
N P+++ HGL ++ + K + +K +D+ G S + DLV
Sbjct: 45 NSPLVIVHGLFGQKQNWNSVGKALHKKLEAPVYAVDVRNHGSSPHTETMSYTEMAEDLVL 104
Query: 458 AVNAVAKHFRWDAFNLVGHSLGA-IIGKL-YNLVYPEKLTKLIEID 589
++ V + + NL+GHS+G I+ +L + + +++ KLI D
Sbjct: 105 FIDKVKEETKKTRVNLLGHSMGGKIVMRLAIDSKWSDRIEKLIVED 150
>AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine
receptor, class w protein8 protein.
Length = 330
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 644 HFVDYYEQYDKLNAP 688
+F+DYY YDKLN P
Sbjct: 284 YFLDYYVYYDKLNVP 298
>Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical
protein F54B11.3b protein.
Length = 879
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 416 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 553
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
protein F54B11.3a protein.
Length = 1111
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 416 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 553
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein.
Length = 879
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 416 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 553
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
Length = 1111
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 416 FPPGLMINIYDLVYAVNAVAKHFRWDAFNLVGHSLGAIIGKLYNLV 553
F G+ Y+ +YA A +F D + + + A+ GK+YN V
Sbjct: 715 FGTGITNIFYNFIYAPIAGVFNFAGDNYMYFFNEVAAVFGKVYNSV 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,967
Number of Sequences: 27780
Number of extensions: 361477
Number of successful extensions: 1032
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -