Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M13
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 83 2e-16
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 35 0.089
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 34 0.16
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 33 0.27
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 32 0.47
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 30 1.9
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 29 3.3
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 29 3.3
05_05_0299 - 23930657-23932627 29 4.4
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 28 7.7
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 83.4 bits (197), Expect = 2e-16
Identities = 51/145 (35%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Frame = +2
Query: 329 IEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSL 508
+EA FDL + +++A R QAI+ P+L K+ E +IADIL QLL SE++ E + V +L
Sbjct: 1 MEAMFDLVDMEELATRIQAIRGFPLLAKD-AEFVSKIADILGQLLASEENVERDAVHKAL 59
Query: 509 VTILKSDPKGALSGIFSQIHQNTDGELANEIVRERCIKFLSSKIQQLGREIINKEAE-EL 685
+++++ D K +L +F + ++ +RE+ I FL K+ + E++ +AE E
Sbjct: 60 MSLIRQDVKSSLQPLFKHVESGSE-------IREKVICFLKDKVFPVKAELLKPQAEMER 112
Query: 686 IITE-CKKILEDVVAEEFEHIMELL 757
IT+ KK + DV EF+ M+ L
Sbjct: 113 YITDLIKKSVLDVTGLEFKLFMDFL 137
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 34.7 bits (76), Expect = 0.089
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 263 KRLASQFIAKFFNSFPTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLC--KEHKEHTQR 436
+ A + + + S P + + IE + +D V++RK+AIK + LC + + T+
Sbjct: 782 REAALELVGRHIASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTRA 841
Query: 437 IADILAQLLQSEDSTEINV-VTNSLV-TILKSDP 532
+I++++ E S ++ V VT +V + KS P
Sbjct: 842 FVEIISRVNDEESSVQLLVTVTWQIVFHVKKSKP 875
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/137 (18%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Frame = +2
Query: 323 QAIEAQFDLCEDDDVAIRKQAI-KDLPVLCKEHKEHTQRI--ADILAQLLQSEDSTEINV 493
+++EA+ ++D +++++Q++ +L + +EHKEH +RI +L ++ E + E++
Sbjct: 974 ESLEAKLSSLQED-ISLKEQSLLSELENIFQEHKEHEERIDRVHLLLNKIEKEKTVELSN 1032
Query: 494 VTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEIVRERCIKFLSSKIQQLGREIINKE 673
+ ++++ LS + +T + + L + ++ + ++I+ E
Sbjct: 1033 LEREVISL-----TAQLSSTEEERESSTLDTIREVSILRADKAKLEANLEDVNAQMIHYE 1087
Query: 674 AEELIITECKKILEDVV 724
++ + E K ++D+V
Sbjct: 1088 SQLEDLRESKTKIKDLV 1104
>06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 33.1 bits (72), Expect = 0.27
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 4/217 (1%)
Frame = +2
Query: 146 NIEKLYKNYDILAAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQ 325
N + + K D+ ++ E+ EKE L++ V G + A+ FN
Sbjct: 481 NRDTIKKWKDVANDSRKELHDKEKEVLDLRQEVLGLKLSLKEANDQCTLLFNEVQKAWRV 540
Query: 326 AIEAQFDLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNS 505
+ Q DL ++ + K I+ KE ++ D +++LL+ E +I +
Sbjct: 541 SSTLQADLKSENLMLAEKHRIE---------KEQNNQLRDQISRLLEVEQEQKIKMHERD 591
Query: 506 LVTILKSDPKGALSGIFSQIHQNTDGELANEIVRERCIKFLSS-KIQQ--LGREIINKEA 676
L TI K L I SQ+++ + A + +S+ K+ + + K
Sbjct: 592 L-TIQSLQAK--LKSIESQLNEALNSSDARSTIGSESASVISTPKMMESTADSSSVTKRL 648
Query: 677 EELIITECKKILEDVVAEEFEHIMELLT-WSRLGKTP 784
EE + + L + + EE E + + LT S LG +P
Sbjct: 649 EEELAK--RDALIEKLHEENEKLFDRLTEKSGLGSSP 683
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 155 KLYKNYDILAAAKDEISQHEKEYLEILAAVKGS--DKEKRLASQFIAKFFNSFPTLSEQA 328
K KN +ILA +EI + ++E L+ L +K D K +F FF++ P Q
Sbjct: 111 KAMKNNEILA---EEIHESDEEALKYLKDIKWCRIDDPKGFKFEF---FFDTNPFFKNQV 164
Query: 329 IEAQFDLCEDDDVAIRKQAI 388
+ + + ++DD I ++AI
Sbjct: 165 LTKTYHMIDEDDEPILEKAI 184
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 428 TQRIADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEIVR 607
++ + DI++ +LQS+D ++ T+ LV L DP S I Q + L +V+
Sbjct: 339 SEGVFDIMSDVLQSQDKVLVSAGTDILVYFLNQDPNLLRSYIARQENSQEGNSLLGLLVQ 398
>05_05_0136 -
22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 308 PTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPVLCKE-HKEHTQRIAD---ILAQLLQSED 475
P L I A + +I++ A+ CK+ K+ +Q + D +L LLQSED
Sbjct: 238 PCLQAGMITAVLTYIDFFSASIQRVAVSAAANACKKVPKDCSQFVMDSVPVLCNLLQSED 297
Query: 476 STEINVVTNSLVTILKS 526
+ V + L+ I+ S
Sbjct: 298 KMVVEKVASCLINIVDS 314
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 437 IADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEIVRE 610
+ DI++ +LQS+D ++ T+ L+ L DP S I Q + G L +V +
Sbjct: 377 VFDIISDVLQSQDRKIVSAGTDVLILFLNQDPNLLRSYIVQQEGNSLLGLLVKGMVTD 434
>05_05_0299 - 23930657-23932627
Length = 656
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 191 KDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTL 316
K++ + +KE +IL + G D+E S+F+ KFF P L
Sbjct: 227 KEDDDEEKKETEQILIDIFGKDEELDENSKFLKKFFLERPYL 268
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 462 NSWANISAIL*VCSLCSLHKTGKSFMACLRIATS 361
+SW +S +CS C LH+ + + A R++ S
Sbjct: 380 SSWKGLSPRDLLCSFCRLHRLAEPYFAVNRVSAS 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,360,819
Number of Sequences: 37544
Number of extensions: 336086
Number of successful extensions: 918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -