Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M12
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         31   0.67 
03_06_0422 + 33818887-33819996                                         31   0.89 
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     29   2.7  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   6.2  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    28   8.3  
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    28   8.3  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 232 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 375
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -2

Query: 476 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 306
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -2

Query: 524 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 345
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 344 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 255
           GAE  S+ +    T+ +    T T+  G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 485 NSLESEEQQERHHKTEQTHSLRQ 417
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 647 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 510
           N I V A+C+    +S  H  GE++K  I P ++  DSI    +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 107 RPCSQVCHLLQLCTGAPTCSSTHPYTDGTCCPYTALC 217
           +P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 56  QPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,554,267
Number of Sequences: 37544
Number of extensions: 421295
Number of successful extensions: 1320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)