Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M10
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q11SZ6 Cluster: Cytochrome oxidase assembly protein; n=...    33   4.4  
UniRef50_Q1MT73 Cluster: Novel protein; n=3; Danio rerio|Rep: No...    32   5.8  
UniRef50_Q6P9Q4 Cluster: FH1/FH2 domain-containing protein 1; n=...    32   5.8  

>UniRef50_Q11SZ6 Cluster: Cytochrome oxidase assembly protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Cytochrome
           oxidase assembly protein - Cytophaga hutchinsonii
           (strain ATCC 33406 / NCIMB 9469)
          Length = 327

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 339 GFVQRMQIVSRFSSVLVKVHTGVSVLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGR 163
           G +    + S    +L+ +H GV++L   +  W +  +  +K R+H+A  +Y  E  GR
Sbjct: 129 GLLGAKLVSSYLKPILITLHMGVALLIMGILIWLLVEAGKEKQRLHAA--DYAEEDLGR 185


>UniRef50_Q1MT73 Cluster: Novel protein; n=3; Danio rerio|Rep: Novel
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 2105

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 364 KITNIVLTRLC-SKNADCVTFFFCFGKGTYRGVCAQLIFTRLVY-DSIVRAE 215
           K+T  V  RL  SK    V F FC    TY+G+C QL+    V+ + IV+ E
Sbjct: 512 KLTAAVDKRLVLSKTDSRVVFVFCGNGVTYQGMCQQLLKHETVFREEIVKIE 563


>UniRef50_Q6P9Q4 Cluster: FH1/FH2 domain-containing protein 1; n=2;
           Mus musculus|Rep: FH1/FH2 domain-containing protein 1 -
           Mus musculus (Mouse)
          Length = 1197

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 166 KDTIELPDVTALKATKFXQGLAPKQSAGSPPKP 68
           +DT+ +  V A KA+ F   L+P  S G PP P
Sbjct: 559 QDTLNVESVEAGKASPFLSSLSPSLSGGPPPPP 591


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,525,971
Number of Sequences: 1657284
Number of extensions: 6702511
Number of successful extensions: 17219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17216
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)