Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M10
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   0.28 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   3.4  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    25   4.5  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   4.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.8  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 294 LVKVHTGVSVLSSSLHDWCMTASCAQKYRVH 202
           L K + G+++  +   +W + + C++KYR H
Sbjct: 153 LQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 181  NILEGSRMHPILLRARCCHTP 243
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 159 VSFPLIL*HTRRKQNAPDTSARTMLSYTNRVKMS*AQTPLYVPLPKQKKNVTQSAFFEQS 338
           V FP++L + RR+   P  S R    Y++    S  Q P Y    + + + + S+    +
Sbjct: 131 VFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGN 190

Query: 339 RVK 347
            V+
Sbjct: 191 HVR 193


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 227 DAVIHQSCKDELSTDTPVCTFTKTEE-KRDTICIL 328
           D+ I ++  ++   D  V  FTK EE K+D + +L
Sbjct: 293 DSTIEKNASEQKKDDNSVNPFTKIEEKKKDEVTLL 327


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 18  VTNMSLKTLVFCVCVTLGFGGDPALCFGANPXINLVAFKAVTSGS 152
           VTN +L+ + F V   +GF   P   F     ++ +  + + SG+
Sbjct: 66  VTNFTLRGIDFFVDTIVGFPASPETTFKVFSLLDSLCLRLIQSGN 110


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = -1

Query: 336 FVQRMQ-IVSRFSSVLVKVHTGVSVLSSSLHDWCMTAS-----CAQKYRVHSASFEY-VT 178
           F++ +Q +V R+  +  K+H  +S L  S  DW +  S        K    + +F Y +T
Sbjct: 409 FLREVQSLVFRYPLLHSKIHLAISTLKDSGCDWNVGLSYLNWLFVNKRITEAINFFYTIT 468

Query: 177 ESKGRTPSNSL 145
            + G  P N L
Sbjct: 469 INAGTRPPNEL 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,239
Number of Sequences: 5004
Number of extensions: 28734
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)