Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M10
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione S...    28   4.0  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   5.3  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeo...    27   9.3  
U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protei...    27   9.3  

>U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical
           protein ZK742.2 protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 325 NADCVTFFFCFGKGTYRGVCAQLIFTRLVYDSIVRAEVSGAFCFLRV 185
           NADC  F+    +GT  G   Q I+T+  Y  I +A  +   C  ++
Sbjct: 427 NADCHRFWRSADEGTVAGKAQQSIYTQRQYTFIGKAPDNRKVCLAKM 473


>Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical
           protein K08F4.11 protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 116 KFSGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTF 289
           KFS L+  +      +L  D   +S+     RY       + Q+ ++EL  D  V TF
Sbjct: 38  KFSQLKPTFPSGQVPILCIDGAQFSQSTAIARYLARKFGFVGQTAEEELQADEVVDTF 95


>AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione
           S-transferase protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 116 KFSGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTF 289
           KFS L+  +      +L  D   +S+     RY       + Q+ ++EL  D  V TF
Sbjct: 38  KFSQLKPTFPSGQVPILCIDGAQFSQSTAIARYLARKFGFVGQTAEEELQADEVVDTF 95


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 364 KITNIVLTRLCSKNADCVTFFFCFGKGTYRGVCAQLIFTRLVYDSIVRAEVS 209
           +IT++ L     K  + +  FFC G   Y  +C  LI   +V  SI+   ++
Sbjct: 130 RITSVYLHMNNDKYWNLIFIFFCLGSILYSCICNSLIPGHIVEVSILNGTLT 181


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
           protein F54F11.2 protein.
          Length = 1589

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 119 FSGLQGCYIREFDGVLPFDSVTYSKEA 199
           F+ +  C + E+ G  P D  TY   A
Sbjct: 691 FTNMAQCVVNEYSGFCPLDKATYGSAA 717


>U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeobox
           protein 21 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 175 IKGKDTIELPDVTALKA----TKFXQGLAPKQSAGSPPKP 68
           +    T+  PD TA K     T   + LAPK+ + + PKP
Sbjct: 225 VSSTSTVSSPDYTAKKGRATETPKLEELAPKKQSSATPKP 264


>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 268 RHPCMYLYQNRRKT*HNLHSLNKAVLK 348
           +H    LY N R T H LH + K VLK
Sbjct: 343 KHEVGELYTNPRDTGHFLHVMRKEVLK 369


>AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protein
           protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 175 IKGKDTIELPDVTALKA----TKFXQGLAPKQSAGSPPKP 68
           +    T+  PD TA K     T   + LAPK+ + + PKP
Sbjct: 225 VSSTSTVSSPDYTAKKGRATETPKLEELAPKKQSSATPKP 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,663,923
Number of Sequences: 27780
Number of extensions: 168721
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)