Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M10
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    31   0.006
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 0.006
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = -3

Query: 208 GAFCFLRVCYRIKGKDTIELPDVTALKATKFXQGLAPKQSAGSPPKPKVTQTQKTSVFND 29
           G +C L  CY  K   +I    VT L  T   +    K  A  PPKP+ T+T+ TS ++ 
Sbjct: 210 GIYCRL-YCYAQKHVKSIRA--VTKLPDTSMAKSFVRKVHATKPPKPQ-TKTKPTSPYH- 264

Query: 28  MLVTNHRPA 2
             V++H+ A
Sbjct: 265 --VSDHKAA 271


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +2

Query: 143 IREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTFTKTEEK 307
           +R FD +  F    YS     T     +   +H+S K+ L  D   CTF     K
Sbjct: 77  LRLFDKIRVFLDEDYSSAEHFTAL--GNFYFVHESLKNVLLWDFQECTFISVNGK 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/38 (23%), Positives = 14/38 (36%)
 Frame = -3

Query: 145 DVTALKATKFXQGLAPKQSAGSPPKPKVTQTQKTSVFN 32
           D+   +      G + K + G PP P   Q  +    N
Sbjct: 363 DIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALN 400


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 79   PPKPKVTQTQKTSVFNDMLVTN 14
            PP P     Q  S FND   +N
Sbjct: 1860 PPPPPRNHDQNNSSFNDSKESN 1881


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 212 YFCAHDAVIHQSCKDE 259
           + C H+ V+H+  K E
Sbjct: 23  HHCHHNGVVHRDLKPE 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,066
Number of Sequences: 438
Number of extensions: 1912
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)