Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M08
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    31   0.14 
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    30   0.44 
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   4.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.4  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.4  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   7.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.5  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   9.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.5  

>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 315 NNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKP----LSDLIHLVKPHIRELV 482
           NN PN  + RL +    S+S +  T+ +  P  S P   P    ++   +L++   R ++
Sbjct: 54  NNHPNGPQLRLQTHFFHSSSPMHATKGFRFPKSSTPLTLPAVLSVASFANLLQIPTRRIL 113

Query: 483 EDSNLL 500
            D N L
Sbjct: 114 RDLNRL 119


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 300 PPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPL--SDLIHLVKPHIR 473
           PP++    P    Q+  ++  SS S    T  + LP+G VP N+P+   + + L+K  IR
Sbjct: 349 PPSSIQIPPPKPMQKFPANAASSESPPNATGNF-LPSGPVPANEPMLKRESVDLIK--IR 405

Query: 474 EL 479
           +L
Sbjct: 406 QL 407


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 246 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYV-LPNGSVP 422
           Q+ ++S  H  L+IP+P P   SNN  N    ++ SS  S +++ +  R  +   N +  
Sbjct: 61  QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRY 117

Query: 423 CNKPLSDLIHLVK 461
             + LSD +  ++
Sbjct: 118 SRRSLSDWLETIR 130


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 174 PPLVSKNLCSLGPFLQRLS 118
           PPL+ + LCSL P ++RL+
Sbjct: 515 PPLLCERLCSLNPNVERLA 533


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 165 LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATS 314
           +K E  + +  P++  +  E ++TS +    N+S + +  ++P+PT  AT+
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT 574


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 303 PATSNNEPNAKRQRLDSSELS 365
           P  S+N PN KR+R  SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 270 HQDLNIPIPTPPATSNNEPNAKRQRL-DSSELSSNSTIEGTRVYV 401
           H D  + IP+P   ++ +   + QRL   S+++ +  +E  +VY+
Sbjct: 546 HPDDKLMIPSPKIVTHGDAMQEEQRLRQKSQITPDDEVELAKVYL 590


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -2

Query: 607 ASDSTDCISASVSSCIETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGL 428
           +S S     +SVSS + +    PSS    I+     S F S+++S    ++  I S S +
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTI 624

Query: 427 LQGTEPFGST 398
           L    P  S+
Sbjct: 625 LSSPTPSTSS 634


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 426  NKPLSDL----IHLVKPHIRELVEDSNLLKMW 509
            N+ L DL    IHLVKP++    E  N LK W
Sbjct: 1072 NQELLDLLLFSIHLVKPNVETNDEVCNTLKAW 1103


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 198 PEKIVKLNELLE-TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSN 371
           P  +V+ N  ++ T+   + + +D+H +    +  PP++   E N    +L++ ++SS+
Sbjct: 390 PSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSS 448


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 732 YLSLWLVMCEIRNRYCSLHD 791
           Y  +W ++ E   +YCSL+D
Sbjct: 177 YTEIWDLLLETNTKYCSLYD 196


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 399 VLPNGSVPCNKPLSDLIHLVKPH 467
           VLPNG+      ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 231 ETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAK--RQRLDSSELSSNST 377
           E  NF+   +S   Q  N+P+     T N E N    R+RL +  +SS+++
Sbjct: 120 ENDNFRRYGVSGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAS 170


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 135 KVQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 308
           ++Q     LKL+ E L   IK   E+   L E LET     +NL +++ +    +     
Sbjct: 319 EIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQ 378

Query: 309 TSNNE 323
             NN+
Sbjct: 379 KLNNK 383


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 216 LNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT 389
           +++L+   +   +N+ +   ++N+PIP P  +S    N  R+ L+  E   N    GT
Sbjct: 16  VDQLIAERSMLIKNMLEDVGEINVPIPLPNVSS----NVLRKVLEWCEHHKNDLYSGT 69


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = +3

Query: 198 PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNST 377
           PEK  K  E+L++ N    +  D H+ + +       T +++      + +  E   N +
Sbjct: 535 PEKKRKFQEVLQSKNILVSSTEDSHEPVKV-------TEDSQTAIHVSKFEDLE---NKS 584

Query: 378 IEGTRVYVLPNGSVPCNKPLSDLIHLV 458
           +E  +   L + S   +KPL DLI L+
Sbjct: 585 MESEQSLQLLSESENDDKPLIDLIPLL 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,711
Number of Sequences: 5004
Number of extensions: 65679
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)