Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M07
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  INNRVYARKTGRKRDALVAALGSRPRSVSA 157
           + N+VY     R+RDA +++  S P    A
Sbjct: 624 LRNKVYKLAMERERDASLSSTHSHPHEPGA 653


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 345 DHAEGSGADGPTVHPQFSLAVHHAL 419
           DH +GS  DGP   P     +HH +
Sbjct: 149 DH-QGSVLDGPDSPPLVESQMHHQM 172


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 374 AISS*SFSMISKQMEHSSNDHERLRKCS 291
           A SS S    +   +H+S+ + R R+CS
Sbjct: 211 ATSSNSLRNRTHDFQHTSSRYSRERRCS 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,248
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)