Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M06
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    48   2e-06
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    46   7e-06
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.8  
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.8  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 29/94 (30%), Positives = 47/94 (50%)
 Frame = +2

Query: 116 AFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQA 295
           AFS++D  G G+I   ++GDLLRA   NPTLA I                  FL + ++ 
Sbjct: 11  AFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI---TEIESTLPAEVDMEQFLQVLNRP 67

Query: 296 KKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
                 G  E+F++  +++DK+  G++   EL +
Sbjct: 68  NGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRY 101


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 116 AFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX-FLPIYSQ 292
           AFS++D +  G I +  LG ++R+L  +PT A +                   FL + ++
Sbjct: 17  AFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMAR 76

Query: 293 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
             KD D    E+  E  K++DK+ NG +   ELTH
Sbjct: 77  KMKDTDNE--EEVREAFKVFDKDGNGYITVEELTH 109



 Score = 32.3 bits (70), Expect = 0.067
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 390 SHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKV 515
           +H L +LGE+L   EVA++ ++     D DG+I Y  F + +
Sbjct: 108 THVLTSLGERLSQEEVADMIREA--DTDGDGVINYEEFSRVI 147


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 674  APPEELSPPRALPAPVPQSRASVF*GPSHRT 582
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 408 LGEKLDDSEVAEVTKDCMDPED 473
           L EK+ D +   +  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 83  LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSN 199
           + +  +E    AF ++D +  GKI   NL  + + LN N
Sbjct: 104 VERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNEN 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,221
Number of Sequences: 5004
Number of extensions: 41290
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)