Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M06
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light c... 71 6e-13
L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin l... 71 6e-13
Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical pr... 58 8e-09
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 52 4e-07
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 52 4e-07
Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical pr... 37 0.012
AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C pr... 37 0.012
U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin rela... 36 0.020
Z81568-13|CAH10811.1| 153|Caenorhabditis elegans Hypothetical p... 35 0.047
U00050-11|AAM22061.1| 90|Caenorhabditis elegans Myosin light c... 35 0.047
Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical pr... 35 0.062
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 35 0.062
X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein. 35 0.062
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 35 0.062
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 34 0.082
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr... 32 0.44
AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical... 31 1.0
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 29 3.1
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF016671-4|AAB66110.2| 338|Caenorhabditis elegans Hypothetical ... 29 3.1
U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical pr... 28 7.1
>U00050-10|AAA50701.1| 153|Caenorhabditis elegans Myosin light
chain protein 3, isoforma protein.
Length = 153
Score = 71.3 bits (167), Expect = 6e-13
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 119 FSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX--FLPIYSQ 292
F++YD E GKID +GD+ RA PT A + +LP+Y Q
Sbjct: 13 FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72
Query: 293 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
K+K+QG Y DF E LK++DK E G +L AEL H
Sbjct: 73 LAKEKEQGTYADFYEGLKVFDKEETGKILAAELRH 107
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +3
Query: 393 HTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 521
H LLALGE+L E E+ K ED +GM+ Y F+KKV+A
Sbjct: 107 HILLALGERLSADEADELLKGV---EDGEGMVKYEDFIKKVLA 146
>L03412-1|AAA28112.1| 153|Caenorhabditis elegans alkali myosin
light chain protein.
Length = 153
Score = 71.3 bits (167), Expect = 6e-13
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 119 FSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX--FLPIYSQ 292
F++YD E GKID +GD+ RA PT A + +LP+Y Q
Sbjct: 13 FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72
Query: 293 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
K+K+QG Y DF E LK++DK E G +L AEL H
Sbjct: 73 LAKEKEQGTYADFYEGLKVFDKEETGKILAAELRH 107
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +3
Query: 393 HTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 521
H LLALGE+L E E+ K ED +GM+ Y F+KKV+A
Sbjct: 107 HILLALGERLSADEADELLKGV---EDGEGMVKYEDFIKKVLA 146
>Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical
protein T12D8.6 protein.
Length = 142
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/97 (32%), Positives = 49/97 (50%)
Frame = +2
Query: 119 FSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQAK 298
F+ +D +G +I +GD+LRAL NPT A I F+PI+
Sbjct: 11 FAYFDSKGDERISVQQVGDVLRALGQNPTEAEIHKCVGSFDREARLSFED-FVPIFQSVS 69
Query: 299 KDKDQGAYEDFLECLKLYDKNENGLMLGAELTHASCT 409
K++++ E+F+E L +DK NG++ AEL H T
Sbjct: 70 KNREKHTVEEFVEGLSHFDKEGNGMINVAELRHLLTT 106
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATI-XXXXXXXXXXXXXX 259
L++ + AFS++D +G G I LG ++R+L NPT A +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
FL + A+K KD + E+ E +++DK+ NG + AEL H
Sbjct: 65 DFPEFLTM--MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 108
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATI-XXXXXXXXXXXXXX 259
L++ + AFS++D +G G I LG ++R+L NPT A +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
FL + A+K KD + E+ E +++DK+ NG + AEL H
Sbjct: 65 DFPEFLTM--MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 108
>Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical
protein K04C1.4 protein.
Length = 143
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/104 (28%), Positives = 49/104 (47%)
Frame = +2
Query: 98 VERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFL 277
+E F ++D +G GKIDA + ++LR+L+ NP + + FL
Sbjct: 7 MEECREVFMLFDKKGDGKIDAAQVFEVLRSLDENPKNSDVHQCLAKFDKTARISFEN-FL 65
Query: 278 PIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHASCT 409
P+ S + +K + EDF++ L +DK G + AEL T
Sbjct: 66 PVLSHVRNNKIPYSMEDFIKGLSHFDKEGEGFITSAELRQVLTT 109
>Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical
protein ZK673.7 protein.
Length = 160
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = +2
Query: 74 MSXLSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNS---NPTLATIXXXXXXXXX 244
+ LS +E+ F+++D EGKG I A +G +LR + L +
Sbjct: 9 LEKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGS 68
Query: 245 XXXXXXXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAEL 391
+ + D+G E+ E +LYDK NG + ++L
Sbjct: 69 GEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDL 117
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 116 AFSIYDFEGKGKIDAFNLGDLLRALNSN 199
AF +YD EG G I+ +L D+LRAL+ N
Sbjct: 100 AFRLYDKEGNGYINVSDLRDILRALDDN 127
>AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C
protein.
Length = 160
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = +2
Query: 74 MSXLSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNS---NPTLATIXXXXXXXXX 244
+ LS +E+ F+++D EGKG I A +G +LR + L +
Sbjct: 9 LEKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGS 68
Query: 245 XXXXXXXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAEL 391
+ + D+G E+ E +LYDK NG + ++L
Sbjct: 69 GEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDL 117
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 116 AFSIYDFEGKGKIDAFNLGDLLRALNSN 199
AF +YD EG G I+ +L D+LRAL+ N
Sbjct: 100 AFRLYDKEGNGYINVSDLRDILRALDDN 127
>U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin related
genes protein 3 protein.
Length = 164
Score = 36.3 bits (80), Expect = 0.020
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +2
Query: 74 MSXLSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPT-LATIXXXXXXXXXXX 250
+S L++ + AF ++D +G G I LG +RAL NPT +
Sbjct: 20 ISQLTEEEIHEFKEAFLLFDKDGNGTISIKELGVAMRALGQNPTEQQMMEIIHDVDLDGN 79
Query: 251 XXXXXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAE 388
F + + K+ D E E K++D++ NG++ E
Sbjct: 80 GQVEFPEFCVMMKRIMKETDS---EMIREAFKIFDRDGNGVITANE 122
>Z81568-13|CAH10811.1| 153|Caenorhabditis elegans Hypothetical
protein K08E3.10 protein.
Length = 153
Score = 35.1 bits (77), Expect = 0.047
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 119 FSIYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQAK 298
F +D G GKID+ L LRA+ NPT A + F+PIY + +
Sbjct: 14 FHFHDTLGDGKIDSKQLPTALRAMMLNPTEA-LLAEVSKARTSGARITVEEFIPIYKKVE 72
Query: 299 KDKDQG-AYEDFLECLKLYDKNENGLMLGAEL 391
+ ++F L +D+ NG ++ EL
Sbjct: 73 AACGRSTTLKEFQTLLSHFDREGNGQIMLMEL 104
>U00050-11|AAM22061.1| 90|Caenorhabditis elegans Myosin light
chain protein 3, isoformb protein.
Length = 90
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 119 FSIYDFEGKGKIDAFNLGDLLRALNSNPT--LATIXXXXXXXXXXXXXXXXXXFLPIYSQ 292
F++YD E GKID +GD+ RA PT + T +LP+Y Q
Sbjct: 13 FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72
Query: 293 AKKDK 307
K+K
Sbjct: 73 LAKEK 77
>Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical
protein C13C12.1 protein.
Length = 218
Score = 34.7 bits (76), Expect = 0.062
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATI-XXXXXXXXXXXXXX 259
L+ ++ AF ++D +G G I LG +R+L NPT I
Sbjct: 75 LTPEEIDEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQI 134
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
F + + K+ D E E +++DK+ NG++ E +
Sbjct: 135 EFPEFCVMMKRMMKETDS---EMIREAFRVFDKDGNGVITAQEFRY 177
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPT-LATIXXXXXXXXXXXXXX 259
L++ + AF ++D +G G I + LG +R+L NPT +
Sbjct: 29 LNEEEIMEYKAAFRLFDKDGNGSISSKELGVAMRSLGQNPTEQELLDMVNEVDIDGSGTI 88
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
F + + K+ D E E +++D++ NG + E +
Sbjct: 89 DFGEFCQMMKRMNKENDS---EMIREAFRVFDRDGNGFITADEFRY 131
>X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein.
Length = 161
Score = 34.7 bits (76), Expect = 0.062
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPTLATI-XXXXXXXXXXXXXX 259
L+ ++ AF ++D +G G I LG +R+L NPT I
Sbjct: 18 LTPEEIDEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQI 77
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
F + + K+ D E E +++DK+ NG++ E +
Sbjct: 78 EFPEFCVMMKRMMKETDS---EMIREAFRVFDKDGNGVITAQEFRY 120
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 34.7 bits (76), Expect = 0.062
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 83 LSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPT-LATIXXXXXXXXXXXXXX 259
L++ + AF ++D +G G I + LG +R+L NPT +
Sbjct: 29 LNEEEIMEYKAAFRLFDKDGNGSISSKELGVAMRSLGQNPTEQELLDMVNEVDIDGSGTI 88
Query: 260 XXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
F + + K+ D E E +++D++ NG + E +
Sbjct: 89 DFGEFCQMMKRMNKENDS---EMIREAFRVFDRDGNGFITADEFRY 131
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 34.3 bits (75), Expect = 0.082
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Frame = +2
Query: 47 GGNRKTPHKMSXLSKHXVERASFAFSIYDFEGKGKIDAFNLGDLLRALNSNPT-LATIXX 223
G N+ + ++ + AF ++D +G ++ LG+ +R L NPT +
Sbjct: 5 GTNQSVCSDADEFTPEELQEFAQAFKLFDKDGNNTMNIKELGEAMRMLGLNPTEEELLNM 64
Query: 224 XXXXXXXXXXXXXXXXFLPIYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHAS 403
F + + K+ DQ E K++DK+ NG + E H
Sbjct: 65 VNEYDVDGNGKIDFGEFCKMMKEMNKETDQ---ELIRLAFKVFDKDGNGYITAQEFKHFM 121
Query: 404 CT 409
T
Sbjct: 122 TT 123
>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
protein C50F2.2 protein.
Length = 1029
Score = 31.9 bits (69), Expect = 0.44
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 30 SASESREGTEKHHTK*AXSASTXLKGRLSPSQS-TTLKAKARSMPSTLAIS*ERSTQTPH 206
SAS + E + +K T ++ + SP+ K ++ P+ L +R TP
Sbjct: 283 SASRNSESQKPVASK-IQEKKTEVRTKSSPTNPIVNSKQPSQKKPADLTPHPKRPPITPE 341
Query: 207 WQPSRNSVVQRRRARSCSHSKSSFPSTAKQRKTKTRERMKIS 332
PSRNS +Q+ A K+ + +++ + T+ K S
Sbjct: 342 TLPSRNSEIQKPAASKIQEKKTEVIARSQKSEASTKIAQKPS 383
>AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical
protein Y73B3A.12 protein.
Length = 116
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 293 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 397
A+K K + E+ E +++DK+ NG + AEL H
Sbjct: 23 ARKMKGTDSEEEIREAFRVFDKDGNGFISAAELRH 57
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 105 GRLSPSQSTTLKAKARSMPSTLAIS*ERSTQTPHWQPSRNSVVQRRRARSCSHSKS--SF 278
GR S+S+ ++++RS P T + S RS+ R+S RRR+R S SK+
Sbjct: 121 GRTGRSRSSK-RSRSRSRPRTRSGS--RSSSRSRSGSRRSS---RRRSRHRSSSKARGRR 174
Query: 279 PSTAKQRKTKTRERMKISWNV*SCMTR 359
STAK+ K R R + V M+R
Sbjct: 175 ASTAKKTPAKRRSRSRSQQKVKRSMSR 201
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 105 GRLSPSQSTTLKAKARSMPSTLAIS*ERSTQTPHWQPSRNSVVQRRRARSCSHSKS--SF 278
GR S+S+ ++++RS P T + S RS+ R+S RRR+R S SK+
Sbjct: 121 GRTGRSRSSK-RSRSRSRPRTRSGS--RSSSRSRSGSRRSS---RRRSRRRSSSKARGRR 174
Query: 279 PSTAKQRKTKTRERMKISWNV*SCMTR 359
STAK+ K R R + V M+R
Sbjct: 175 ASTAKKTPAKRRSRSRSQQKVKRSMSR 201
>AF016671-4|AAB66110.2| 338|Caenorhabditis elegans Hypothetical
protein W09G10.3 protein.
Length = 338
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 104 RASFAFSIYDFEGKGKID 157
RA FAF + D EGKG++D
Sbjct: 189 RAQFAFQLMDEEGKGRVD 206
>U40798-7|AAA81477.1| 342|Caenorhabditis elegans Hypothetical
protein R13A1.8 protein.
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Frame = +3
Query: 51 GTEKHHTK*AXSASTXLKGRLSPSQSTTLKAKARSMPSTLAIS*ERSTQTPHWQPSRNSV 230
G+ ++T + + G+ S + + +A+S + + S+ + + +P +NS
Sbjct: 43 GSSSNNTSSTTPPTIQINGKESFDEFEHGQLRAKSASTDFSSLRSTSSTSSYQKPQKNSA 102
Query: 231 VQRRRARSCSHSKSSFPSTAKQRKTKTRERMKISWNV*SCMTRTKTVSCL-ALSSHTLLA 407
+RR+ S + F A+ +M SCM RTK+ S L + +++ +
Sbjct: 103 SERRKIFLSSSTNQDF--MARSLDDSMTAKM-------SCMIRTKSHSPLKQMRTYSFRS 153
Query: 408 L--GEKLDDSEVAEVTKD 455
+ E L D E EV D
Sbjct: 154 IPSEENLIDKESCEVVAD 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,071
Number of Sequences: 27780
Number of extensions: 247264
Number of successful extensions: 905
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -