Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M04
         (408 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7EQI0 Cluster: Putative uncharacterized protein; n=1; ...    33   1.7  
UniRef50_Q82QS1 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_Q5KHR9 Cluster: RNA processing-related protein, putativ...    33   2.9  
UniRef50_Q5KJH6 Cluster: Suppressor protein SPT23, putative; n=2...    32   3.9  
UniRef50_Q5NP19 Cluster: Dioxygenase; n=26; Proteobacteria|Rep: ...    32   5.1  
UniRef50_A6GHQ1 Cluster: Putative uncharacterized protein; n=1; ...    32   5.1  
UniRef50_Q06508 Cluster: Vacuolar protein sorting-associated pro...    31   6.8  
UniRef50_UPI000049A05E Cluster: Ras guanine nucleotide exchange ...    31   8.9  

>UniRef50_A7EQI0 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 978

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 8   PMALISHRVSVVTCLCGVAPELNQCHFVARSDTVPLRFAWVCIRRPPSWSPLG 166
           P ALIS  + ++    GVAP       +A SD + L F WV ++   SW  +G
Sbjct: 815 PFALISANLGILNKRLGVAPSALFMVVIAISDFLTLHFFWV-VKDEGSWLEIG 866


>UniRef50_Q82QS1 Cluster: Putative uncharacterized protein; n=1;
           Streptomyces avermitilis|Rep: Putative uncharacterized
           protein - Streptomyces avermitilis
          Length = 129

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 19/42 (45%), Positives = 19/42 (45%)
 Frame = -2

Query: 191 HFVAGSNHAPAATKMAADGCRPTRNAMGLYPTWRQNGTGLVP 66
           H VA S H  A T  AA  CR T       PTW  N TG  P
Sbjct: 90  HIVATSGHLAACTPGAAGCCRRTARC----PTWWTNSTGTGP 127


>UniRef50_Q5KHR9 Cluster: RNA processing-related protein, putative;
           n=1; Filobasidiella neoformans|Rep: RNA
           processing-related protein, putative - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 511

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 40  GDVFVWCSSGTKPVPFCRQVGYSPIAFRVGLHPSAAILVAAG 165
           GDV +W  SG KP+      G++    R+  HPS A L +AG
Sbjct: 246 GDVKLWSLSGEKPLSTLS--GHTSRVGRLAFHPSGAYLASAG 285


>UniRef50_Q5KJH6 Cluster: Suppressor protein SPT23, putative; n=2;
            Filobasidiella neoformans|Rep: Suppressor protein SPT23,
            putative - Cryptococcus neoformans (Filobasidiella
            neoformans)
          Length = 1417

 Score = 32.3 bits (70), Expect = 3.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 100  GYSPIAFRV--GLHPSAAILVAAGAWLLPATKW 192
            GY+P+AF    G H  A +L+ AGAW   AT +
Sbjct: 998  GYTPLAFAALCGRHTCARVLIEAGAWYDRATNY 1030


>UniRef50_Q5NP19 Cluster: Dioxygenase; n=26; Proteobacteria|Rep:
           Dioxygenase - Zymomonas mobilis
          Length = 468

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/54 (29%), Positives = 33/54 (61%)
 Frame = -2

Query: 185 VAGSNHAPAATKMAADGCRPTRNAMGLYPTWRQNGTGLVPELHHTNTSPQKHDD 24
           +A S+H  A    AA+G   T +A+    ++ +NG  ++P+++H+ T P++H +
Sbjct: 25  IAASDHMSAGAWAAANGIG-TISAVNA-DSYDENGR-IIPQIYHSKTRPERHQE 75


>UniRef50_A6GHQ1 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 639

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 38  VVTCLCGVAPELNQCHFVAR-SDTV--PLRFAWVCIRRPPSWSPLGRGCCQLQNGF 196
           + T L G  PEL +     R S TV   +R A     R  +W+P+G+G C + NG+
Sbjct: 19  IATALLGCVPELEEEQGELRVSPTVIEAIRDAACVDERRVAWAPVGQGPCPIVNGW 74


>UniRef50_Q06508 Cluster: Vacuolar protein sorting-associated
           protein 66; n=2; Saccharomyces cerevisiae|Rep: Vacuolar
           protein sorting-associated protein 66 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 300

 Score = 31.5 bits (68), Expect = 6.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 113 MGLYPTWRQNGTGLVPELHHTNTSPQK 33
           M  Y  WR NGTG+ P L +T   P K
Sbjct: 1   MEKYTNWRDNGTGIAPFLPNTIRKPSK 27


>UniRef50_UPI000049A05E Cluster: Ras guanine nucleotide exchange
           factor; n=1; Entamoeba histolytica HM-1:IMSS|Rep: Ras
           guanine nucleotide exchange factor - Entamoeba
           histolytica HM-1:IMSS
          Length = 440

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 16  IDQSSCFCGDVFVWCSSGTKPVPFCRQVGYSPIAFRVGLHPSAAILVAAGAWL 174
           ID  S F  +  +WCSS   PV F     +  I  ++  HP+  +L+A  +W+
Sbjct: 61  IDVLSEFPFNKTLWCSSLFYPVEFHEDKIFECITAKLLTHPNNTLLLALQSWI 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,652,618
Number of Sequences: 1657284
Number of extensions: 7262299
Number of successful extensions: 20215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20212
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)