Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M04
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503     31   0.47 
01_05_0746 + 24856362-24856710,24856799-24856986                       29   1.4  
03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775...    28   2.5  
02_03_0050 + 14433013-14433303                                         27   5.7  
11_01_0196 - 1547373-1549859                                           27   7.6  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    27   7.6  
08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966...    27   7.6  
08_01_0695 + 6148873-6150051                                           27   7.6  
07_03_1031 - 23389263-23389541                                         27   7.6  
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887...    27   7.6  

>06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503
          Length = 206

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 65  PELNQC-HFVARSDTVPLRFAWVCIRR---PPSWSPLGRGCCQLQN 190
           P  NQC  FVA+    PL+  W  +RR   P  + P  R C   +N
Sbjct: 50  PSSNQCTSFVAKHIKAPLQTVWSLVRRFDQPQLFKPFVRKCVMREN 95


>01_05_0746 + 24856362-24856710,24856799-24856986
          Length = 178

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 92  ARSDTVPLRFAWVCIRRPPSW 154
           ARSDT P   A VC+RR P+W
Sbjct: 84  ARSDTWPC-LAGVCVRRKPAW 103


>03_05_1125 +
           30576951-30577010,30577163-30577285,30577393-30577552,
           30577635-30577702,30577928-30578473,30578725-30579312,
           30579392-30579604,30580227-30580388
          Length = 639

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 131 RPTRNAMGLYPTWRQNGTGLVPELHHTNTSP 39
           RPT N MG++     +G GL    +HT   P
Sbjct: 313 RPTANLMGMHAQIPSSGMGLTSPSYHTRMYP 343


>02_03_0050 + 14433013-14433303
          Length = 96

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 SPLGRGCCQLQNGFVERYHVPIYLVLSNCKF 247
           S LGR   Q Q G V R H P+Y+  S C++
Sbjct: 19  SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47


>11_01_0196 - 1547373-1549859
          Length = 828

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -1

Query: 180 WQQPRPSGDQDGGRRMQTHAKRNGTVSDLATKWHWFS 70
           W    P+    GG R++ H   N  V D   K  W S
Sbjct: 120 WNSSTPAAGGSGGARVRLHDSGNLVVEDAGGKTLWQS 156


>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
            5988427-5989228,5990966-5991016,5992391-5993464,
            5994458-5994706
          Length = 1666

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = -1

Query: 174  QPRPSGDQDGGRRMQTHAKRNGTVSDLATKWHWFSSGATPHKHVTTE 34
            QP   G+ D   R+    ++   +  +     WFS G  P  H   E
Sbjct: 983  QPVNKGNSDAADRLSEQMRKTFRIEAVGLMSLWFSYGTMPMVHFVVE 1029


>08_02_0720 +
           20394898-20395284,20396062-20396202,20396304-20396669,
           20397146-20397388,20397474-20397566,20397892-20398077,
           20398259-20398471
          Length = 542

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 55  WCSSGTKPVPFCRQVG 102
           WC+SG   +PFC+ +G
Sbjct: 492 WCNSGADRLPFCQILG 507


>08_01_0695 + 6148873-6150051
          Length = 392

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/44 (27%), Positives = 16/44 (36%)
 Frame = +1

Query: 34  FCGDVFVWCSSGTKPVPFCRQVGYSPIAFRVGLHPSAAILVAAG 165
           FC   F   S+   P P CR  G+   +     HP       +G
Sbjct: 49  FCSACFRSLSAAASPCPSCRAAGFCSPSCAAASHPRLLCTALSG 92


>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 204 RSTNPFCSWQQPRPSGDQDGG 142
           R+  P+CSWQ    S D  GG
Sbjct: 3   RTCLPWCSWQLAAASADNSGG 23


>03_02_0652 -
           10188076-10188243,10188353-10188541,10188633-10188750,
           10188841-10189491,10189870-10190033,10190137-10190574
          Length = 575

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 VSRGSASVGRHLGRRWGVVAAS 182
           VS G AS+GRHL RR   V  S
Sbjct: 9   VSAGEASLGRHLARRLVQVGVS 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,681
Number of Sequences: 37544
Number of extensions: 210127
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)