Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M04
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              29   1.5  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                29   1.5  
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2)                      27   4.5  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +1

Query: 88  CRQVGYSPIAFRVGLHPSAAILVAAGAWLL------PATKWVCRTVSCTYLF 225
           CR + YS +  +  L  S +ILVA G+ +L       +  W+C T SC  LF
Sbjct: 241 CRLLFYSQLDLQY-LFMSPSILVALGSAVLIHAAFYSSRTWICSTYSCRLLF 291



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +1

Query: 139 SAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKL 285
           S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L
Sbjct: 211 SPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQLDLQYLFMSPSILVAL 264


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +1

Query: 130 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKLEF 291
           L  S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L  
Sbjct: 213 LFMSPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGS 271

Query: 292 QLYSY 306
           ++  Y
Sbjct: 272 EVIIY 276



 Score = 29.1 bits (62), Expect = 1.5
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +1

Query: 88  CRQVGYSPIAFRVGLHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*IL 249
           CR + YS +  +  L  S +ILVA G+ ++       +  W+C T SC  LF +  L + 
Sbjct: 246 CRLLFYSQLDLQY-LFISPSILVALGSEVIIYVAFYSSRTWICSTYSCRLLF-YSQLDLQ 303

Query: 250 FQFVYYCIMVKL 285
           + F+   I+V L
Sbjct: 304 YLFMSPSILVAL 315



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +1

Query: 139 SAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKL 285
           S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L
Sbjct: 149 SPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQLDLQYLFMSPSILVAL 202


>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/69 (28%), Positives = 26/69 (37%)
 Frame = +1

Query: 13  GIDQSSCFCGDVFVWCSSGTKPVPFCRQVGYSPIAFRVGLHPSAAILVAAGAWLLPATKW 192
           G   S   C  V V C +G   + +C  +   P       HP   I+   G       KW
Sbjct: 809 GFSLSDQLCTGV-VKCVNGNLKMSYCPGIPAKPTNCA---HPELKIIARPGKCC--KKKW 862

Query: 193 VCRTVSCTY 219
           VC   SC+Y
Sbjct: 863 VCADKSCSY 871


>SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2)
          Length = 609

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 56  GVAPELNQCHFVARSDTVPLRFAW 127
           GV PE + C    RS T+PLR+ W
Sbjct: 438 GVTPESDTCE---RSITIPLRYVW 458


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 152  WSPLGRGCCQLQNGFVERYHVPIYLVLSNCK 244
            WSP+     +L+NG +  YH+ +Y +  N K
Sbjct: 2182 WSPI---LPELENGIITGYHINVYELSGNLK 2209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,732,808
Number of Sequences: 59808
Number of extensions: 240146
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)