Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M03
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   1.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.8  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   5.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.4  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 128 CLCRTLQLPATPFPTFHPYQYLP 196
           C  R +Q    PFP FH Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 213 ERRAVDGRY**G*NVGKGVAGSCSVRQRHHIRVGRR 106
           ERR V G Y  G  +G G  G   V+  HH++ G +
Sbjct: 117 ERRKVIGNYVLGKTIGAGSMG--KVKVAHHLKTGEQ 150


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 105 RGGRPVCGASAVRCNCRLPPFLRFILISTYRLQLCVHRLLP 227
           R G+ V G   V  +  L PF+     ST  L L   RL+P
Sbjct: 286 RNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVP 326


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 146 QLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIIS 256
           Q P +P P+  P    PSTA       H S +   +S
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVS 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,112
Number of Sequences: 5004
Number of extensions: 28015
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)