Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M03
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1776 + 29436477-29438240 31 0.57
12_01_0282 - 2088302-2089081 29 2.3
07_03_0441 + 18256103-18258076 28 3.0
01_01_0779 - 6030245-6031780 28 3.0
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 27 5.3
07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237 27 5.3
11_01_0273 - 2048527-2049297 27 7.0
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 27 9.2
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 27 9.2
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 9.2
01_01_0782 - 6056440-6057954 27 9.2
>07_03_1776 + 29436477-29438240
Length = 587
Score = 30.7 bits (66), Expect = 0.57
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 98 SPARRPTRMWCLCRTLQLPATPFPTF--HPYQYLPSTALRSPASTHKSHTQMIISFVNKM 271
S A R ++ + + LPA P PTF P Y S L + AS H + ++F++K
Sbjct: 174 STAIRESKPVYISVSCNLPAVPHPTFSRDPVPYFLSPRLSNQASLHAA-LDATLAFLDKA 232
Query: 272 LK*IHTSG 295
+K + +G
Sbjct: 233 VKPVLVAG 240
>12_01_0282 - 2088302-2089081
Length = 259
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 95 SSPARRPTRMWCLCRTLQLPATPFPTFHPYQYL--PSTALRSPAST 226
SS RPT + CLC LPATP PT L P R+P ST
Sbjct: 26 SSGCGRPTTV-CLCP--YLPATPLPTSTTVVILHHPHALRRNPLST 68
>07_03_0441 + 18256103-18258076
Length = 657
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 137 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSS 304
R+ L P P+ H Y+ LPS A+ + +H H ++ +V+ + H+S +SS
Sbjct: 100 RSPHLLPNPLPSLHFYRSLPS-AVAADLLSHPHH--LVSCYVSLLRSFAHSSSSSS 152
>01_01_0779 - 6030245-6031780
Length = 511
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 118 PYVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIWN 297
P++ + TA Y + ++ P+VY S+F GF A+ D F + + Y N
Sbjct: 389 PHIAVEAFQLTAQYTIPK-GTMVFPSVYESSFQGFQDADAFDPDRFFSEARREDVVYKRN 447
Query: 298 FFCY 309
F +
Sbjct: 448 FLAF 451
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 162 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKR 70
G A +C R+RHH R+ R +HC+++R
Sbjct: 85 GSARNCR-RRRHHPRIRLRPPPTRRHCERER 114
>07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237
Length = 194
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 155 ATPFPTFHPYQYLPSTALRSPASTHKSHTQMI 250
A P P+ HP L +TA SPA+ + + I
Sbjct: 25 APPLPSLHPAAQLMTTAFSSPAAAAAARVRRI 56
>11_01_0273 - 2048527-2049297
Length = 256
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 95 SSPARRPTRMWCLCRTLQLPATPFPTFHPYQYL--PSTALRSPAST 226
SS RP+ + CLC LPATP PT L P R+P ST
Sbjct: 26 SSGCGRPSTV-CLCP--YLPATPLPTSTTVVVLHHPHALRRNPLST 68
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 83 QCWLSSPARRPTRMWCLCRTLQLPATPFPTFHPYQYLPSTALRSPASTHKS 235
+ W+S P R L R L L P HP + S++ RSP + S
Sbjct: 89 EVWISEPTSVEERRRVLLRRLGLAHDSEPLPHPSPRVSSSSPRSPTPSPPS 139
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 81 HNAGSLRLRGGRPVCGASAVRCNC 152
+N SL+ GRP+C ++ C+C
Sbjct: 201 YNNSSLKNADGRPICPSTGKPCSC 224
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 113 PTRMWCLCRTLQLP 154
P RMWC CR + LP
Sbjct: 277 PGRMWCHCRMVYLP 290
>01_01_0782 - 6056440-6057954
Length = 504
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 118 PYVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIWN 297
P++ + T Y + +L +P++Y S+F GF+ A+ + F + + Y N
Sbjct: 382 PHIALQNFQLTESYTIPK-GTLVLPSMYESSFQGFHDPDAFDPERFFSEARREDVVYKRN 440
Query: 298 FFCY 309
F +
Sbjct: 441 FLAF 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,334,310
Number of Sequences: 37544
Number of extensions: 191764
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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