Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_M03
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81531-6|CAB04317.2| 330|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.1
U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical pr... 28 2.7
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 27 4.8
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 27 8.3
U80955-7|AAG01555.1| 116|Caenorhabditis elegans Hypothetical pr... 27 8.3
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 27 8.3
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 27 8.3
AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z81531-6|CAB04317.2| 330|Caenorhabditis elegans Hypothetical
protein F36D3.6 protein.
Length = 330
Score = 30.7 bits (66), Expect = 0.51
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 118 PYVVPLPYAATAGYPLSYVSSLSVPTV 198
P+V+ YAA AGYPL + L VPT+
Sbjct: 72 PFVI---YAAVAGYPLGVIVYLGVPTI 95
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 102 LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 224
+R G+ C GA+ RC+ LP +LR R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 102 LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 224
+R G+ C GA+ RC+ LP +LR R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 102 LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 224
+R G+ C GA+ RC+ LP +LR R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 102 LRGGRPVC--GASAVRCNCRLPPFLRFILISTYRLQLCVHRLL 224
+R G+ C GA+ RC+ LP +LR R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical
protein F28H1.1 protein.
Length = 221
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 158 TPFPTFHPYQYLPSTALRSPASTHKSHTQ 244
TP PTF PY S +L SP ++ S+ +
Sbjct: 156 TPLPTFQPYPSTRSYSLESPTTSVTSNEE 184
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Frame = +2
Query: 8 PMSANRVQSNLASDKV--SKCLRRF*SQCWLSSPARRPTRMWCL----CRTLQLPATPFP 169
P N NL ++ + L F +CW +PA RPT C+ C + P P
Sbjct: 249 PFLYNVATRNLRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308
Query: 170 TFHP 181
+ P
Sbjct: 309 LWDP 312
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 137 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 274
R +QLP TP T P + P +R+P + F+N+ L
Sbjct: 654 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 696
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 137 RTLQLPATPFPTFHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 274
R +QLP TP T P + P +R+P + F+N+ L
Sbjct: 658 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 700
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 270
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 271 VKVNTYI 291
+ + T +
Sbjct: 304 LGITTLL 310
>U80955-7|AAG01555.1| 116|Caenorhabditis elegans Hypothetical
protein T04C9.2 protein.
Length = 116
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 132 SAVRCNCRLPPFLRFILIST 191
+A RC CR PPFL + ST
Sbjct: 35 AASRCRCRRPPFLSIRIGST 54
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 270
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 271 VKVNTYI 291
+ + T +
Sbjct: 304 LGITTLL 310
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 26.6 bits (56), Expect = 8.3
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 97 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 270
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 271 VKVNTYI 291
+ + T +
Sbjct: 304 LGITTLL 310
>AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical
protein Y6E2A.6 protein.
Length = 357
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 61 MFKAFLITMLALFACAAADPY--VVPLPY---AATAGYPLSYVSSLSVPT 195
M K + +L C D Y ++ +PY +A AGYPL + L +PT
Sbjct: 45 MEKVKISILLMHLTCFWLDIYFNILSIPYMIHSAAAGYPLGILFHLGLPT 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,107
Number of Sequences: 27780
Number of extensions: 161234
Number of successful extensions: 572
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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