Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M02
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    27   0.18 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    25   0.73 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   6.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.0  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 470 CDDDY*CPSSAGYQDSSPN*PSFP-CRGPLACSWRPALWPPPCDT*TREMHTGHFLAPV 297
           C  +Y C  +    D+     S P CR  L CS   ALWP P    T E+H G  L  V
Sbjct: 29  CKSNY-CQKAPITPDTEATGLSLPACR--LFCSEAAALWPKP----TGEVHVGTTLVKV 80


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 719 VNEGAPXXK-RAKQPTFDEVYNQSSPTNTTVYCGGF 823
           ++EGAP  K      T+   +  + PTNT++Y G +
Sbjct: 248 LDEGAPPSKINLGLGTYGRGFALADPTNTSLYAGTY 283


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 772 SL*SKLTDXHHSLLWRF 822
           SL  KL D HH LL  F
Sbjct: 127 SLVIKLVDYHHQLLGHF 143


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 687  FVRMDLDPSHWPFIAWMAASASAF 616
            FV +DLDP+ W  +   A + + F
Sbjct: 1549 FVLLDLDPACWYHLRVTAHNNAGF 1572


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 261 NNVHRKTSVTLGSKLPT*RVFGWLSSP 181
           N++    S++ G +LP    FG ++SP
Sbjct: 38  NSITVPLSISTGQRLPANFSFGQVNSP 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,110
Number of Sequences: 336
Number of extensions: 4524
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)