Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M01
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.68 
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   6.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.4  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 121 SVSMLNISLMREYVLIVKRAKC*IAVIKYY 210
           ++S LN  LMR YVL   R +  I +IKY+
Sbjct: 170 TISTLNTRLMRSYVLCDPRVRPLIVMIKYW 199


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 102 VCTYRFIY*MDFIICLTSKIDFTSSML 22
           +  Y++IY  D+ +CL  KI F   ML
Sbjct: 102 ILNYKWIYRKDYNLCLNQKIAFVLVML 128


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 471 YVNFQKNTLTHISKHTTATVCIYNTE*ENALTFKIIMERYSQA--YIISYVIYETISA-F 301
           YVN +K  L  +SKH       Y  +  + L F + + R  +   YI     +  I A +
Sbjct: 143 YVNIEKEALCILSKHPGFIKLFYTFQDAHNLYFVLSLARNGELLDYINKLGRFNEICAQY 202

Query: 300 LCEYVIDTINY 268
               ++D+I+Y
Sbjct: 203 YAALIVDSIDY 213


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 295 TQKCT-YRFIYHITNYVCLAISFHDNLES 378
           T+K T + FIY I  Y+C+A+    +L +
Sbjct: 8   TEKLTLFLFIYGICIYICIAVPIRSDLST 36


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 264 LNLFKYLRSFVFINY*DTIVLNNCNLTFSAFNNKNILSHKTNI*HADRN 118
           +N +  L S +F ++   + L N N  +S FNN + +   T+     RN
Sbjct: 1   MNSYAILLS-LFFSFERLLTLANANSLYSPFNNSSFVDSDTSFSDLSRN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,839
Number of Sequences: 5004
Number of extensions: 62855
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)