Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_M01
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      29   3.9  
SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)                     29   5.1  
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)              29   5.1  
SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            28   9.0  
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   28   9.0  

>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -2

Query: 627 ISHTTHRLCYQHQRRTTTYIPPFIHLTKHINNLYNSQYLAHVHA*SNIHHLSYVNFQKNT 448
           + HTT  +C Q+  RT+ Y     H    +   Y + +  + H+  + H +  ++     
Sbjct: 192 VHHTTRTVCAQYTPRTSHYT----HRMCTLRATYITIHAPYAHSTRHTHRMCALHAPYAH 247

Query: 447 LTHISKHTTATVCIYNT 397
            T   +HTT TVC + T
Sbjct: 248 TTRHVQHTTRTVCAHYT 264



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -2

Query: 651 HILLHQIFISHTTHRLCYQHQRRTTTYIPPFIHLTKHINNLYNSQYLAHVHA*SNIHH 478
           +I LH  + +HTT  +C Q+  RT+       H  + ++ +Y + +  +VH   ++HH
Sbjct: 99  YITLHAPY-AHTTRTVCAQYMPRTSHR----THRMRTLHAMYITLHAPYVHTTRHVHH 151


>SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = -2

Query: 633 IFISHTTHR-LCYQHQRRTTTYIPPFIHL--TKHINNLYNSQYLAHVHA*SNIHHLSYVN 463
           ++ S+TT + +CY H   TT+    ++H   T    +LY   Y     A  ++H  +  +
Sbjct: 44  VYTSNTTSQAICYVHTYNTTSQAIRYVHTYNTTSQASLYVHTYNTTSQATRHVHTYNTTS 103

Query: 462 FQKNTLTHISKHTTATVCIYNT 397
            Q   + + S  T+  +C  +T
Sbjct: 104 -QATRIVYTSNTTSQAICYVHT 124


>SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -2

Query: 615 THRLCY-QHQRRTTTYIPPFIHLTKHINNLYNSQYLAHVHA*SNIHHLSYVNFQKNTLTH 439
           +H  CY  H    TT          H++  YNS    H      +HH+ + ++  +T  H
Sbjct: 5   SHTACYTMHYYTLTTRYTIQYDTVHHVHASYNSHTARHTIQYDTVHHV-HASYNSHTARH 63

Query: 438 ISKHTTAT 415
              + T T
Sbjct: 64  TMHYYTLT 71


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 564 PFIHLTKHINNLYNSQYLAHVHA*SNIHHLSYVN 463
           P +H   HI+ + +   + H+HA  ++H + Y++
Sbjct: 864 PHVHAVPHIHGVPDVHAVPHIHAVPDVHAVPYIH 897


>SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 650 IFYYTKFLFRIPHIVYATNINDGQPHTFLLSYILQNILIIYTIHNTLHMC--MPKVTYII 477
           +F++  FL  IPH+    N+       + LSYI     II+TI   + MC    K+  ++
Sbjct: 565 LFWFIPFLTEIPHLFELLNVIVISTLAYRLSYI-----IIFTILPNIFMCYAYTKIGLVL 619

Query: 476 F 474
           F
Sbjct: 620 F 620


>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 597 QHQRRTTTYIPPFIHLTKHINNLYNSQYLAH-VHA*SNIHHLSYV---NFQKNTLTHISK 430
           +HQ  T    P + H T  I + Y+SQY  + +   S  HH +      +  NT+T  S+
Sbjct: 201 RHQHNTIAIPPQYHHNTIAIPSQYHSQYHRNTITIPSQYHHNTIAIPSQYHHNTITIPSQ 260

Query: 429 HTTATVCIYNTE*ENAL 379
           +   T+ I +    N +
Sbjct: 261 YHRNTITIQSQYHHNTI 277


>SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
 Frame = -2

Query: 654 KHILLHQIFIS-HTTHRLCYQHQRRTTTYIPPFIHLTKHINNLYNSQYLAHVHA*SNIHH 478
           +HI    ++++ H T    Y+ QR T T +    H+T+    +Y SQ+          H+
Sbjct: 137 QHITRTTVYMAQHNTRTTVYKAQRNTRTTVYKAQHITR--TTVYMSQHNTRTRVYKAQHN 194

Query: 477 --LSYVNFQKNTLTHISKHTTATVCIYNTE*ENALTFKIIMERYSQAYIISYV 325
              +    Q+NT T + K    T  I      +  T      ++++  I +YV
Sbjct: 195 TRTTVYKAQRNTRTTVYKAQRNTRTIVYKAQHSTTTVVYYKAQHNRIPIYAYV 247


>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
          Length = 339

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = -2

Query: 582 TTTYIPPFIHLTK---HINNLYNSQYLAHVHA*SNIHHLSYVNFQK--NTLTHISKHTTA 418
           + T  PP +  T    H+ +L  S ++ H+   S++HHLS  +  +  +T +H+   +T+
Sbjct: 167 SATSQPPVMSATSQLSHVRHLSTSSHVRHLSTSSHVHHLSTSSHVRHLSTSSHVRHLSTS 226

Query: 417 T 415
           +
Sbjct: 227 S 227


>SB_43938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 594 HQRRTTTYIPPFIHLTKHINNLYNSQYLAHV-HA*SNIHHLSYVNFQKNTLTHI 436
           H    T  I    H+T  IN++Y  Q   H+ H  +  +H+ +V    NT+THI
Sbjct: 30  HIYHVTNTINHIYHVTNTINHIY--QVTNHIYHVTNTTNHIYHVT---NTITHI 78


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 552 LTKHINNLYNSQYLAHVHA*SNIHHLSYVNFQKN--TLTHI 436
           +TK +NN+Y   YL H    S++   S+V   ++  T +H+
Sbjct: 87  MTKLLNNIYGDDYLTHAPTASHVPTASHVPSTRHAPTASHV 127


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = -2

Query: 663 ENLKHILLHQIFISHTTHRLCYQHQRRTTTYIPPFI----HLTKHINNLYNSQYLAHVHA 496
           E    I  HQ  I+  ++R+ Y+HQ+  T Y         HLT++ N +Y  Q   H+  
Sbjct: 30  EYSNRIYKHQKHITEYSNRI-YKHQKHLTEYSNRIYKHQKHLTEYSNRIYKHQ--KHITE 86

Query: 495 *SNIHHLSYVNFQKNTLTHISKHTTATVCIYNT 397
            SN         Q   L   +++T     + NT
Sbjct: 87  YSN----RIYKHQSTLLNTATEYTNTKSTLLNT 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,002
Number of Sequences: 59808
Number of extensions: 443541
Number of successful extensions: 961
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)