Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L19
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    27   3.3  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   4.4  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
 Frame = +2

Query: 23  AMKSDGDENPXHETKSPPPIXSDVAVVDDRIMAVATQAASSTPISQL-NVTKSSRVHIGP 199
           +++ +   +P    +  P I ++ +   D         ++ST I  L NV K +R++  P
Sbjct: 237 SLRCNRGHSPLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNVKKGNRLN-SP 295

Query: 200 KFISVTQTVRNTXXIKGQILGQELISSKSTRXLRCSIAVFV 322
            FI++ Q+++NT      +    L S   TR    ++A+ +
Sbjct: 296 PFITIPQSIKNTNS-NFLLSSPSLFSDTRTRPASYALALII 335


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 163 QCNKVVTGPYRTQVHISN 216
           +CN + T PY T++H+ N
Sbjct: 73  RCNNISTFPYATKIHVIN 90


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 104 DDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISVTQTVRNTXXIKG-QILGQELISS 280
           ++ + AVAT AASS P ++  V+ ++     P   S T TV +   + G ++ G+E  +S
Sbjct: 60  NESMSAVATSAASSLPTAENGVSLNA---ASPTIHSNTPTVVSHPVMSGSELKGEESHNS 116

Query: 281 KST 289
             T
Sbjct: 117 PGT 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,763
Number of Sequences: 5004
Number of extensions: 49982
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)