Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L19
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    30   1.7  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    30   1.7  
AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5 ...    29   2.3  
AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 li...    29   2.3  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   3.0  
AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    28   7.0  
U39648-8|AAK39291.1|  270|Caenorhabditis elegans Beta carbonic a...    27   9.3  
U39648-7|AAM15604.1|  429|Caenorhabditis elegans Beta carbonic a...    27   9.3  

>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 326 WTLIVTLGXGFYISHY-ALSKLTRLDLXI 409
           W+L+++ G  FYI H  ALS+LT L + I
Sbjct: 104 WSLLISFGYRFYILHNPALSRLTLLKITI 132


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 326 WTLIVTLGXGFYISHY-ALSKLTRLDLXI 409
           W+L+++ G  FYI H  ALS+LT L + I
Sbjct: 104 WSLLISFGYRFYILHNPALSRLTLLKISI 132


>AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5
           protein.
          Length = 225

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 86  SDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFIS-VTQTVRNTXXIKG 250
           SDVAV +   +   T+A+ +T      + K   V   P FI+ +T+ V N    KG
Sbjct: 2   SDVAVAETPAVKTPTKASKATKAKATKIPKVKVVAAHPPFINMITEAVSNLKDRKG 57


>AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 like
           protein 5 protein.
          Length = 225

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 86  SDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFIS-VTQTVRNTXXIKG 250
           SDVAV +   +   T+A+ +T      + K   V   P FI+ +T+ V N    KG
Sbjct: 2   SDVAVAETPAVKTPTKASKATKAKATKIPKVKVVAAHPPFINMITEAVSNLKDRKG 57


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 91  RSCSGRQNNGSCNASCEFDA 150
           R CS R N+G+C+A C + A
Sbjct: 641 RKCSERANDGNCDADCNYAA 660


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 91  RSCSGRQNNGSCNASCEFDA 150
           R CS R N+G+C+A C + A
Sbjct: 641 RKCSERANDGNCDADCNYAA 660


>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 326 WTLIVTLGXGFYISHYALSKLTRLDL 403
           W+L+++ G  +YI HY  S LTRL L
Sbjct: 104 WSLLLSFGYRYYILHY--SALTRLKL 127


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 59   ETKSPPPIXSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPK 202
            +   PP + + V  V+     +A+  A S+P+ +LN T ++     PK
Sbjct: 872  QADEPPIVKTVVVTVESPAKPIASAPAVSSPLIKLNTTTATTTMTTPK 919


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 666 PNTLAPLXSNTMPLPDTRXL 607
           P+T+AP+  +TMP+P T+ L
Sbjct: 195 PSTVAPVTCSTMPMPTTQPL 214


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 WASTYPTTRYPSSHVSIXIYTSPGIF 428
           W S YPTT   +SH+S  IY  P I+
Sbjct: 279 WVSIYPTTLTFNSHLSAMIYL-PAIY 303


>U39648-8|AAK39291.1|  270|Caenorhabditis elegans Beta carbonic
           anhydrase protein1, isoform a protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 485 LSFVIVGHSATNYCTEKYECIKEMLDVQKIHLHRGWQDI 601
           LS + V     N C+  +E +KE L+  ++H+H  W DI
Sbjct: 184 LSQINVLQQLINICS--HEFLKEYLESGRLHIHGMWFDI 220


>U39648-7|AAM15604.1|  429|Caenorhabditis elegans Beta carbonic
           anhydrase protein1, isoform b protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 485 LSFVIVGHSATNYCTEKYECIKEMLDVQKIHLHRGWQDI 601
           LS + V     N C+  +E +KE L+  ++H+H  W DI
Sbjct: 343 LSQINVLQQLINICS--HEFLKEYLESGRLHIHGMWFDI 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,100
Number of Sequences: 27780
Number of extensions: 285343
Number of successful extensions: 696
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)