Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L19
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 145  DAYITTQCNKVVTGPYRTQVHISNSNRQEYXXNQRPNTRSGADIX*EHTXTPL*YRR 315
            +AY   + ++ +    RT   I   N + +    R    S  DI  E   +PL Y+R
Sbjct: 1167 NAYPEVELDRELRPYLRTAAAILTWNEKRFWERLRYAIPSAGDISIESKSSPLVYKR 1223


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 145 DAYITTQCNKVVTGPYRTQVHISN 216
           D +    CNK++T   R + HI N
Sbjct: 1   DEFRCEPCNKILTSLTRLRRHIQN 24


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 509 SATNYCTEKYECIKEMLDVQKIHLHRGWQDIGPNXLVSGNGIV 637
           S T +  E Y C +  L  + I LH  +   G   +   NG++
Sbjct: 83  STTGFSKECYCCRESYLKERHITLHHCYDADGIKLMNEENGVM 125


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 509 SATNYCTEKYECIKEMLDVQKIHLHRGWQDIGPNXLVSGNGIV 637
           S T +  E Y C +  L  + I LH  +   G   +   NG++
Sbjct: 83  STTGFSKECYCCRESYLKERHITLHHCYDADGIKLMNEENGVM 125


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 516 PTTVLKSTNVLRKCWMCKKSICIADGKI 599
           P + +     +RKC    + +C ++GKI
Sbjct: 97  PNSTIAVCVCMRKCPRRHRPVCASNGKI 124


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 343  CDNERPANKHGDTTAEXACALRXYQL 266
            CD  +   KH  TT + +     Y+L
Sbjct: 949  CDQNKAVKKHITTTIDCSTQSEYYEL 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,872
Number of Sequences: 438
Number of extensions: 3622
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)