Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L17
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    51   1e-07
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +1

Query: 169 QVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILE 336
           +V N+I  E +   M TGR +VR + C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 46  RVENVIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 247  KKHHAPCDVLLASHDPELPNRLDSQPVAPVN 155
            K H   C V +A+ DPEL  + + QP   VN
Sbjct: 1197 KCHLNTCPVGIATQDPELRKKFEGQPEHVVN 1227


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 346 PKLVPILLSLPCIFDSLQLQIH 281
           P L+PI L L C+   L+L  H
Sbjct: 135 PILIPIFLKLDCVSTFLELMNH 156


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 286 IHIPNPASYRSSYKKHHAPCDVLL---ASHDPELPNRL 182
           I  P P++Y+ + +K   PCD+ +   A +D  LP +L
Sbjct: 451 ILFPAPSNYKLTIEKPPFPCDLTIPHTAINDSWLPMKL 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,437
Number of Sequences: 5004
Number of extensions: 30450
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)