Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L16
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    56   3e-08
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   2.1  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   2.1  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   2.1  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   4.9  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +2

Query: 629 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLP 769
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS P
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAP 57


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +2

Query: 623 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLP 769
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAP 56


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 TCVSQNTGTCPESSCACPEISCACPETSCACP 234
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 682  YSLPMFTFYNLPLSLKCFSNRFHYFF 605
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 SCACPEISCACPETSCACPES 240
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 SCACPEISCACPETSCACPES 240
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 620 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 757
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,765
Number of Sequences: 27780
Number of extensions: 147308
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)