Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L15
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0321 + 33112793-33113026,33113166-33113546                      139   2e-33
05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...   113   2e-25
01_06_0463 + 29567339-29567644,29568416-29568835                      107   1e-23
03_01_0118 - 929956-929988,930059-930145,930230-930331,930515-93...    29   5.8  

>03_06_0321 + 33112793-33113026,33113166-33113546
          Length = 204

 Score =  139 bits (337), Expect = 2e-33
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
 Frame = +3

Query: 270 PIDHDRCRYPYCIVWTPIPVLTWFFPFLGHMGISTSNGVIRDFAGPYFVSEDLMAFGNPT 449
           PID  R R+P CIVWTP+P+++W  PF+GH+GI   +GVI DFAGP FVS D  AFG   
Sbjct: 10  PIDPRRARFPCCIVWTPLPLISWLIPFIGHIGICREDGVILDFAGPNFVSVDNFAFGAVA 69

Query: 450 KYWQLSPQKA-----NNGQAGWDAAVAEASEIYKKRMHIIFYDNCHSHVAKALNIMNYGG 614
           +Y Q++  +        G + WD A+ +  + ++ R + +F  NCHS V   LN + Y G
Sbjct: 70  RYIQVNSDECYKLLEPEGASTWDDALRKGVQEFQHRGYSLFTCNCHSFVVNNLNRLFYSG 129

Query: 615 SRNWNMVKLAIFMIPYSKYVSVGGFLKTWLPFLVIVGI 728
              WN+V LA  M    ++VS    +KT+ PF +++ I
Sbjct: 130 HDKWNVVSLAAVMFLRGRWVSTASVVKTFFPFALVITI 167


>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score =  113 bits (271), Expect = 2e-25
 Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 22/182 (12%)
 Frame = +3

Query: 273 IDHDRCRYPYCIVWTPIPVLTWFFPFLGHMGISTSNGVIRDFAGPYFVSEDLMAFGNPTK 452
           +D    R+P CIVWTP+PV++W  P++GH+GI+  +G + DFAG  FVS D +A+G+  +
Sbjct: 113 VDQKGTRFPCCIVWTPLPVVSWLAPYIGHVGIAREDGTVMDFAGSNFVSVDDLAYGSAAR 172

Query: 453 YWQLSPQK----AN-----------NGQAG----WDAAVAEASEIYKKRMHIIFYDNCHS 575
           Y QL  +K    AN           + +AG    WD A+   +  ++ + + +F  N HS
Sbjct: 173 YLQLDRRKCCFPANLAAHVCARSYEHSEAGTAISWDDALQSGARRFEHKCYNLFTCNSHS 232

Query: 576 HVAKALNIMNYGGSRNWNMVKLAIFMIPYSKYVSVGGFLKTWLPFLVI--VGII-CGLAY 746
            VA  LN + YGGS  WN++ LA  +    +++     +++ LPF  +  VG++  G ++
Sbjct: 233 FVASCLNRLAYGGSVGWNVLNLAALVWLRGRWLGKMAVVRSLLPFAAVACVGVLMAGWSF 292

Query: 747 VI 752
           +I
Sbjct: 293 LI 294


>01_06_0463 + 29567339-29567644,29568416-29568835
          Length = 241

 Score =  107 bits (256), Expect = 1e-23
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
 Frame = +3

Query: 273 IDHDRCRYPYCIVWTPIPVLTWFFPFLGHMGISTSNGVIRDFAGPYFVSEDLMAFGNPTK 452
           ID  R R+P CIVWTP+P+++W  P++GH GI   +G + DFAG   VS D  A+G+  +
Sbjct: 35  IDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIAR 94

Query: 453 YWQLSPQKA---------------NNGQAG----WDAAVAEASEIYKKRMHIIFYDNCHS 575
           Y QL  +K                 + +AG    WD A+      +  + + +F  NC+S
Sbjct: 95  YLQLDRKKCCFPVNLATHVCERSYKHAEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYS 154

Query: 576 HVAKALNIMNYGGSRNWNMVKLAIFMIPYSKYVSVGGFLKTWLPFLVI--VGII 731
            VA  LN + Y GS  WN++ +A  +    ++V     ++++ PFL +  VGI+
Sbjct: 155 FVANCLNRLAYNGSVKWNVLNVAALVWLRGQWVDKMSVVRSFFPFLTVTCVGIL 208


>03_01_0118 -
           929956-929988,930059-930145,930230-930331,930515-930610,
           931053-931148,931502-931564,931565-931630,931716-931790,
           931906-932077,932116-932285
          Length = 319

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 321 IPVLTWFFPFLGHMGISTSNGVIRDFAGPYFVSEDLMAFGNPTKYW 458
           IPVL      LG +  S + GV+ DF+ P  V +++     P   W
Sbjct: 124 IPVLNDLTMVLGSIAQSRATGVVVDFSEPSTVYDNVKQVSYPPTIW 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,058,990
Number of Sequences: 37544
Number of extensions: 516702
Number of successful extensions: 1278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)