Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_L14
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 56 7e-09
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 54 3e-08
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 28 1.5
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 27 2.0
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.0
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 3.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.5
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 6.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.2
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.2
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 55.6 bits (128), Expect = 7e-09
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +2
Query: 323 EFAESATEGPSVIFLKDLARKYGLVIVSPILEKDD--VGTWWNTAVVIDEEGNVLGKHRK 496
+ AE A EGPS + +LA KY + I+ EK++ +N+ + I E GN+ G +RK
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRK 118
Query: 497 NHLPSVGSFSETPYYAPGNMGHPVFDTKYAKIAVNICYGRHQALNWLMLGLNGAEIVSI 673
HL +E ++ G+ P+F+T + K+ V IC+ + LNGA+++ +
Sbjct: 119 VHLFD----TERKHFKKGS-DFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLLVV 172
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 53.6 bits (123), Expect = 3e-08
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Frame = +2
Query: 233 AASEGVQIICLEETWSMPFFLCTREKEKWDEFAESATEG-PSVIFLKDLARKYGLVIVSP 409
AA G +I L E ++ P+ ++++AE E PS L +A+ +
Sbjct: 71 AAKNGSNVIVLPEIFNSPY-----GTGYFNQYAEPIEESSPSYQALSSMAKDTKTYLFGG 125
Query: 410 ILEKDDVGTWWNTAVVIDEEGNVLGKHRKNHL-----PSVGSFSETPYYAPGNMGHPVFD 574
+ + G +NTA+V D G ++ HRK HL P SF E+ +PG+ + D
Sbjct: 126 SIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVD 184
Query: 575 TKYAKIAVNICY 610
T+Y K + ICY
Sbjct: 185 TEYGKFGLGICY 196
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 293 LCTREKEKWDEFAESATEGPSVIFLKDLARKYGLV--IVSPILEKDDVGTWWNTAVVIDE 466
L TR E + + + +G + L ++ ++Y + ++ +LE +D T + ++V+
Sbjct: 217 LTTRVVEVFVNNYQFSIDGNKEVLLAEIPKQYIVTGNLLYRVLELEDFATQMDASIVMKN 276
Query: 467 EGNVLGKHRKNHLPSV 514
E L +H +LPS+
Sbjct: 277 ELIALNEHMLTYLPSI 292
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 354 LGPSVADSANSSHFSFSLVHR 292
LGP++ +++SHF+F L H+
Sbjct: 1025 LGPNLRSDSSTSHFAFDLAHQ 1045
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -3
Query: 429 TSSFSNIGDTITNPYF--LAKS--FKKI-TLGPSVADSANSSHFSFSLVHRKNG 283
T SF NIG NP F + K ++I LG V+ + S F +++R NG
Sbjct: 46 TKSFDNIGQMSCNPAFGGIGKGTLMREIDALGGVVSGVCDESAIQFHMLNRSNG 99
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 286 WHRPCFFQAYYLNAL 242
WHR C F AY LN L
Sbjct: 233 WHRKCAFDAYILNYL 247
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 331 RISHRRSQCNFFKGFSKKIWIG 396
RIS+RRS NF++ K WIG
Sbjct: 746 RISNRRSFRNFYQAGYKYAWIG 767
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 226 KYGCIRGRSNNMLGRNMVDAILSMHERKGKVG-*ICRISHRRSQCNFFKGFSKKIWIGNC 402
KYG I N+ML + V +LS+ K+ + R S C+F K + IG+
Sbjct: 2386 KYGIIDFNQNSMLVSDFVLPVLSLQFSNSKIAEYLWRDFFNASVCSFTKD-EIPLCIGSI 2444
Query: 403 VSYIRK 420
+S++ +
Sbjct: 2445 ISFLSR 2450
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 419 KDDVGTWWNTAVVIDEEGNVLGKHRKNHLPSVGSFSETP 535
KD+ + N A ++ + +V +HR+N +PSV P
Sbjct: 341 KDNNDYYDNAARILKQMFHVAERHRRNRVPSVQEVLNPP 379
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 432 PTSSFSNIGDTITNPYFLAKSFKKITLGPSVADSANSSHFSFS 304
P+ + S D+ ++PY K F KI+L S S+H S S
Sbjct: 130 PSRANSPQSDSYSSPYEKGKLFPKISLKSSKDVPTASAHISSS 172
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 468 SSSITTAVFHHVPTSSFSNIGDTITNPYFLAKSFKKITL 352
+SS T VFH V +F G+T+ P KSF K +
Sbjct: 42 NSSATVHVFHGVVNRTFKTKGNTVGLP----KSFSKAVI 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,655
Number of Sequences: 5004
Number of extensions: 69361
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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