Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_L14
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.23 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -2

Query: 691 RXQWPKD*NDFSSIQT*HQPIERLMSPVANVYR----NFSVFCIEHWVAHVTRGVIWR 530
           + +W  D  D+  + T H P E +  P   +Y     N+ V  +   + H T  V+W+
Sbjct: 81  KLKWNPD--DYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWK 136


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 147 NILLYYRHANRSVNKEKR 200
           N ++ YR+ + S+N+EKR
Sbjct: 426 NTIIDYRNNDLSINEEKR 443


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 93  FPLPEXLARQXLLSSDSYNILL 158
           FPLP  LA   +   D Y+ LL
Sbjct: 653 FPLPPNLASANISQLDPYSSLL 674


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +2

Query: 275 WSMPFFLCTREKEKWDEFAE 334
           W++P F+C +   +++E +E
Sbjct: 47  WNVPTFMCHKYGLRFEEVSE 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,331
Number of Sequences: 438
Number of extensions: 4777
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)